| Organizational principles of 3D genome architecture MJ Rowley, VG Corces Nature Reviews Genetics 19 (12), 789-800, 2018 | 1099 | 2018 |
| Evolutionarily conserved principles predict 3D chromatin organization MJ Rowley, MH Nichols, X Lyu, M Ando-Kuri, ISM Rivera, K Hermetz, ... Molecular cell 67 (5), 837-852. e7, 2017 | 543 | 2017 |
| Widespread long-range cis-regulatory elements in the maize genome WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ... Nature plants 5 (12), 1237-1249, 2019 | 308 | 2019 |
| A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing Y Zhu, MJ Rowley, G Böhmdorfer, AT Wierzbicki Molecular cell 49 (2), 298-309, 2013 | 237 | 2013 |
| Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome AT Wierzbicki, R Cocklin, A Mayampurath, R Lister, MJ Rowley, ... Genes & development 26 (16), 1825-1836, 2012 | 184 | 2012 |
| A Dicer-independent route for biogenesis of siRNAs that direct DNA methylation in Arabidopsis R Ye, Z Chen, B Lian, MJ Rowley, N Xia, J Chai, Y Li, XJ He, ... Molecular cell 61 (2), 222-235, 2016 | 165 | 2016 |
| Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture C Cubenas-Potts, MJ Rowley, X Lyu, G Li, EP Lei, VG Corces Nucleic acids research 45 (4), 1714-1730, 2017 | 162 | 2017 |
| Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus J Fernandez-Albert, M Lipinski, MT Lopez-Cascales, MJ Rowley, ... Nature neuroscience 22 (10), 1718-1730, 2019 | 145 | 2019 |
| The three-dimensional genome: principles and roles of long-distance interactions MJ Rowley, VG Corces Current opinion in cell biology 40, 8-14, 2016 | 134 | 2016 |
| The Cul4-Ddb1Cdt2 ubiquitin ligase inhibits invasion of a boundary-associated antisilencing factor into heterochromatin S Braun, JF Garcia, M Rowley, M Rougemaille, S Shankar, HD Madhani Cell 144 (1), 41-54, 2011 | 123 | 2011 |
| Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin G Böhmdorfer, S Sethuraman, MJ Rowley, M Krzyszton, MH Rothi, ... Elife 5, e19092, 2016 | 102 | 2016 |
| Maintenance of CTCF-and transcription factor-mediated interactions from the gametes to the early mouse embryo YH Jung, I Kremsky, HB Gold, MJ Rowley, K Punyawai, A Buonanotte, ... Molecular cell 75 (1), 154-171. e5, 2019 | 96 | 2019 |
| RNA‐directed DNA methylation requires stepwise binding of silencing factors to long non‐coding RNA G Böhmdorfer, MJ Rowley, J Kuciński, Y Zhu, I Amies, AT Wierzbicki The Plant Journal 79 (2), 181-191, 2014 | 96 | 2014 |
| Condensin II counteracts cohesin and RNA polymerase II in the establishment of 3D chromatin organization MJ Rowley, X Lyu, V Rana, M Ando-Kuri, R Karns, G Bosco, VG Corces Cell reports 26 (11), 2890-2903. e3, 2019 | 95 | 2019 |
| Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in Anopheles gambiae E Gómez-Díaz, RS Yerbanga, T Lefèvre, A Cohuet, MJ Rowley, ... Scientific reports 7 (1), 40655, 2017 | 93 | 2017 |
| Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing MJ Rowley, MI Avrutsky, CJ Sifuentes, L Pereira, AT Wierzbicki PLoS genetics 7 (6), e1002120, 2011 | 91 | 2011 |
| Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals MJ Rowley, A Poulet, MH Nichols, BJ Bixler, AL Sanborn, EA Brouhard, ... Genome research 30 (3), 447-458, 2020 | 87 | 2020 |
| Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress X Lyu, MJ Rowley, VG Corces Molecular cell 71 (6), 940-955. e7, 2018 | 83 | 2018 |
| Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature communications 14 (1), 3303, 2023 | 76 | 2023 |
| RNA polymerase V targets transcriptional silencing components to promoters of protein‐coding genes Q Zheng, MJ Rowley, G Böhmdorfer, D Sandhu, BD Gregory, ... The Plant Journal 73 (2), 179-189, 2013 | 76 | 2013 |