| MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu Bioinformatics 33 (24), 3909-3916, 2017 | 254 | 2017 |
| P3DB 3.0: from plant phosphorylation sites to protein networks Q Yao, H Ge, S Wu, N Zhang, W Chen, C Xu, J Gao, JJ Thelen, D Xu Nucleic Acids Research 42 (D1), D1206-D1213, 2014 | 86 | 2014 |
| Dimension-agnostic and granularity-based spatially variable gene identification using BSP J Wang, J Li, ST Kramer, L Su, Y Chang, C Xu, MT Eadon, K Kiryluk, Q Ma, ... Nature Communications 14 (1), 7367, 2023 | 15 | 2023 |
| Evolutionary dynamics of indels in SARS-CoV-2 spike glycoprotein RSP Rao, N Ahsan, C Xu, L Su, J Verburgt, L Fornelli, D Kihara, D Xu Evolutionary Bioinformatics 17, 11769343211064616, 2021 | 15 | 2021 |
| Computational prediction of ubiquitination proteins using evolutionary profiles and functional domain annotation W Qiu, C Xu, X Xiao, D Xu Current genomics 20 (5), 389-399, 2019 | 12 | 2019 |
| Large-scale integrative analysis of soybean transcriptome using an unsupervised autoencoder model L Su, C Xu, S Zeng, L Su, T Joshi, G Stacey, D Xu Frontiers in Plant Science 13, 831204, 2022 | 5 | 2022 |
| Sucrose induces rapid activation of CfSAPK, a mitogen‐activated protein kinase, in Cephalostachyum fuchsianum Gamble cells L Li, Y Li, L Zhang, C Xu, T Su, D Ren, H Yang Plant, Cell & Environment 35 (8), 1428-1439, 2012 | 5 | 2012 |
| Dimension-agnostic and granularity-based spatially variable gene identification J Wang, J Li, ST Kramer, L Su, Y Chang, C Xu, Q Ma, D Xu Biorxiv, 2023 | 3 | 2023 |
| Evolution of the regulatory subunits for the heteromeric acetyl-CoA carboxylase AC Conrado, G Lemes Jorge, RSP Rao, C Xu, D Xu, Y Li-Beisson, ... Philosophical Transactions B 379 (1914), 20230353, 2024 | 2 | 2024 |
| Unveiling orphan receptor-like kinases in plants: novel client discovery using high-confidence library predictions in the Kinase–Client (KiC) assay GL Jorge, D Kim, C Xu, SH Cho, L Su, D Xu, LE Bartley, G Stacey, ... Frontiers in Plant Science 15, 1372361, 2024 | 1 | 2024 |
| FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants C Xu, T Shaw, SA Choppararu, Y Lu, SN Farooq, Y Qin, M Hudson, ... Database 2024, baae074, 2024 | 1 | 2024 |
| Comparative omics reveals unanticipated metabolic rearrangements in a high-oil mutant of plastid acetyl-CoA carboxylase A Kataya, JRS Nascimento, C Xu, MG Garneau, S Koley, A Kimberlin, ... bioRxiv, 2023.08. 31.555777, 2023 | 1 | 2023 |
| Identifying receptor kinase substrates using an 8,000 peptide kinase client library enriched for conserved phosphorylation sites D Kim, GL Jorge, C Xu, L Su, SH Cho, N Ahsan, D Chen, L Zhou, ... Molecular & Cellular Proteomics, 100926, 2025 | | 2025 |
| Persistent fatty acid catabolism during plant oil synthesis S Koley, P Jyoti, M Lingwan, M Wei, C Xu, K Chu, R Williams, AJK Koo, ... bioRxiv, 2025.02. 03.636323, 2025 | | 2025 |
| scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data J Li, M Raina, Y Wang, C Xu, L Su, Q Guo, RM Ferreira, MT Eadon, Q Ma, ... bioRxiv, 2025.02. 02.636138, 2025 | | 2025 |
| scBSP: A fast and accurate tool for identifying spatially variable genes from spatial transcriptomic data J Li, Y Wang, MA Raina, C Xu, L Su, Q Guo, Q Ma, J Wang, D Xu bioRxiv, 2024.05. 06.592851, 2024 | | 2024 |
| Fatplants: A Comprehensive Website Platform of Plant Fat Related Genes, Proteins and Metabolism C Xu, D Xu, EB Cahoon, SA Chopparapu, T Joshi, J Thelen, AJ Koo Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 0 | | |
