| The mRNA related ceRNA–ceRNA landscape and significance across 20 major cancer types J Xu, Y Li, J Lu, T Pan, N Ding, Z Wang, T Shao, J Zhang, L Wang, X Li Nucleic acids research 43 (17), 8169-8182, 2015 | 188 | 2015 |
| Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data Z Zhao, J Bai, A Wu, Y Wang, J Zhang, Z Wang, Y Li, J Xu, X Li Database 2015, bav082, 2015 | 125 | 2015 |
| LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations Y Li, L Li, Z Wang, T Pan, N Sahni, X Jin, G Wang, J Li, X Zheng, Y Zhang, ... Nucleic acids research 46 (3), 1113-1123, 2018 | 103 | 2018 |
| Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer Y Li, J Chen, J Zhang, Z Wang, T Shao, C Jiang, J Xu, X Li Oncotarget 6 (28), 25003, 2015 | 48 | 2015 |
| Identification and characterization of lncRNA mediated transcriptional dysregulation dictates lncRNA roles in glioblastoma Y Li, Z Wang, Y Wang, Z Zhao, J Zhang, J Lu, J Xu, X Li Oncotarget 7 (29), 45027, 2016 | 47 | 2016 |
| LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns Y Li, H Chen, T Pan, C Jiang, Z Zhao, Z Wang, J Zhang, J Xu, X Li Oncotarget 6 (37), 39793, 2015 | 46 | 2015 |
| Genomic and molecular features distinguish young adult cancer from later-onset cancer W Lee, Z Wang, M Saffern, T Jun, K Huang Cell reports 37 (7), 2021 | 39 | 2021 |
| Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types Z Wang, J Yin, W Zhou, J Bai, Y Xie, K Xu, X Zheng, J Xiao, L Zhou, X Qi, ... Nucleic Acids Research 48 (5), 2287-2302, 2020 | 35 | 2020 |
| Competing endogenous RNA network analysis identifies critical genes among the different breast cancer subtypes J Chen, J Xu, Y Li, J Zhang, H Chen, J Lu, Z Wang, X Zhao, K Xu, Y Li, ... Oncotarget 8 (6), 10171, 2016 | 34 | 2016 |
| Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes J Xu, ZS Wang, S Li, J Chen, J Zhang, C Jiang, Z Zhao, J Li, Y Li, X Li Briefings in bioinformatics 19 (1), 52-64, 2018 | 25 | 2018 |
| Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk Y Li, X Jin, Z Wang, L Li, H Chen, X Lin, S Yi, Y Zhang, J Xu Briefings in bioinformatics 20 (4), 1193-1204, 2019 | 23 | 2019 |
| LncPep: a resource of translational evidences for lncRNAs T Liu, J Wu, Y Wu, W Hu, Z Fang, Z Wang, C Jiang, S Li Frontiers in cell and developmental biology 10, 795084, 2022 | 20 | 2022 |
| Construction and analysis of dynamic transcription factor regulatory networks in the progression of glioma Y Li, T Shao, C Jiang, J Bai, Z Wang, J Zhang, L Zhang, Z Zhao, J Xu, X Li Scientific reports 5 (1), 15953, 2015 | 17 | 2015 |
| PD_NGSAtlas: a reference database combining next-generation sequencing epigenomic and transcriptomic data for psychiatric disorders Z Zhao, Y Li, H Chen, J Lu, PM Thompson, J Chen, Z Wang, J Xu, C Xu, ... BMC medical genomics 7, 1-11, 2014 | 15 | 2014 |
| Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomes Z Wang, X Fan, Y Shen, MS Pagadala, R Signer, KJ Cygan, ... Genome Medicine 13, 1-13, 2021 | 5 | 2021 |
| Methods for Identification of Protein-RNA Interaction J Xu, Z Wang, X Jin, L Li, T Pan Non-coding RNAs in complex diseases: a bioinformatics perspective, 117-126, 2018 | 5 | 2018 |
| Systematic analysis of DNA methylation-mediated TF dysregulation on lncRNAs reveals critical roles in tumor immunity J Yin, N Ding, J Yu, Z Wang, L Fu, Y Li, X Li, J Xu Molecular Therapy Nucleic Acids 34, 2023 | 3 | 2023 |
| Editorial: Genetic and Cellular Heterogeneity in Tumors Z Wang, L Ma, J Xu, C Jiang Frontiers in Cell and Developmental Biology 12, 1519539, 2024 | | 2024 |
| Master regulators governing protein abundance across ten human cancer types Z Wang, M Wojciechowicz, J Rosen, A Elmas, WM Song, Y Liu, K Huang bioRxiv, 2024.11. 11.619147, 2024 | | 2024 |