Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts L Sun, H Luo, D Bu, G Zhao, K Yu, C Zhang, Y Liu, R Chen, Y Zhao Nucleic acids research 41 (17), e166-e166, 2013 | 1682 | 2013 |
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis D Bu, H Luo, P Huo, Z Wang, S Zhang, Z He, Y Wu, L Zhao, J Liu, J Guo, ... Nucleic acids research 49 (W1), W317-W325, 2021 | 1193 | 2021 |
NONCODE 2016: an informative and valuable data source of long non-coding RNAs Y Zhao, H Li, S Fang, Y Kang, W Wu, Y Hao, Z Li, D Bu, N Sun, MQ Zhang, ... Nucleic acids research 44 (D1), D203-D208, 2016 | 647 | 2016 |
Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network Q Liao, C Liu, X Yuan, S Kang, R Miao, H Xiao, G Zhao, H Luo, D Bu, ... Nucleic acids research 39 (9), 3864-3878, 2011 | 582 | 2011 |
NONCODEv4: exploring the world of long non-coding RNA genes C Xie, J Yuan, H Li, M Li, G Zhao, D Bu, W Zhu, W Wu, R Chen, Y Zhao Nucleic acids research 42 (D1), D98-D103, 2014 | 484 | 2014 |
NONCODE v3. 0: integrative annotation of long noncoding RNAs D Bu, K Yu, S Sun, C Xie, G Skogerbø, R Miao, H Xiao, Q Liao, H Luo, ... Nucleic acids research 40 (D1), D210-D215, 2012 | 456 | 2012 |
HERB: a high-throughput experiment-and reference-guided database of traditional Chinese medicine SS Fang, L Dong, L Liu, JC Guo, LH Zhao, JY Zhang, DC Bu, XK Liu, ... Nucleic acids research 49 (D1), D1197-D1206, 2021 | 430 | 2021 |
SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping Y Wu, F Zhang, K Yang, S Fang, D Bu, H Li, L Sun, H Hu, K Gao, W Wang, ... Nucleic acids research 47 (D1), D1110-D1117, 2019 | 427 | 2019 |
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants L Zhao, J Wang, Y Li, T Song, Y Wu, S Fang, D Bu, H Li, L Sun, D Pei, ... Nucleic acids research 49 (D1), D165-D171, 2021 | 241 | 2021 |
Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks X Guo, L Gao, Q Liao, H Xiao, X Ma, X Yang, H Luo, G Zhao, D Bu, F Jiao, ... Nucleic acids research 41 (2), e35-e35, 2013 | 201 | 2013 |
Identification of prognostic biomarkers in hepatitis B virus-related hepatocellular carcinoma and stratification by integrative multi-omics analysis R Miao, H Luo, H Zhou, G Li, D Bu, X Yang, X Zhao, H Zhang, S Liu, ... Journal of hepatology 61 (4), 840-849, 2014 | 159 | 2014 |
ncFANs: a web server for functional annotation of long non-coding RNAs Q Liao, H Xiao, D Bu, C Xie, R Miao, H Luo, G Zhao, K Yu, H Zhao, ... Nucleic acids research 39 (suppl_2), W118-W124, 2011 | 138 | 2011 |
DeepOmix: a scalable and interpretable multi-omics deep learning framework and application in cancer survival analysis L Zhao, Q Dong, C Luo, Y Wu, D Bu, X Qi, Y Luo, Y Zhao Computational and structural biotechnology journal 19, 2719-2725, 2021 | 79 | 2021 |
Imbalance of TGF-β1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness J Ning, Y Ye, D Bu, G Zhao, T Song, P Liu, W Yu, H Wang, H Li, X Ren, ... Molecular Therapy 29 (6), 2067-2087, 2021 | 72 | 2021 |
A high‐quality walnut genome assembly reveals extensive gene expression divergences after whole‐genome duplication J Zhang, W Zhang, F Ji, J Qiu, X Song, D Bu, G Pan, Q Ma, J Chen, ... Plant biotechnology journal 18 (9), 1848, 2020 | 72 | 2020 |
Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing H Luo, S Sun, P Li, D Bu, H Cao, Y Zhao PloS one 8 (8), e70835, 2013 | 63 | 2013 |
Systematic study of human long intergenic non-coding RNAs and their impact on cancer L Sun, HT Luo, Q Liao, DC Bu, GG Zhao, CN Liu, YN Liu, Y Zhao Science China Life Sciences 56, 324-334, 2013 | 41 | 2013 |
Evolutionary annotation of conserved long non-coding RNAs in major mammalian species DC Bu, HT Luo, F Jiao, SS Fang, CF Tan, ZY Liu, Y Zhao Science China Life Sciences 58, 787-798, 2015 | 36 | 2015 |
FangNet: mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm D Bu, Y Xia, JY Zhang, W Cao, P Huo, Z Wang, Z He, L Ding, Y Wu, ... Computational and structural biotechnology journal 19, 62-71, 2021 | 35 | 2021 |
Identification and function annotation of long intervening noncoding RNAs H Luo, D Bu, L Sun, S Fang, Z Liu, Y Zhao Briefings in Bioinformatics 18 (5), 789-797, 2017 | 34 | 2017 |