| Development and evaluation of a deep learning model for protein–ligand binding affinity prediction MM Stepniewska-Dziubinska, P Zielenkiewicz, P Siedlecki Bioinformatics 34 (21), 3666-3674, 2018 | 557 | 2018 |
| OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization G Ahdritz, N Bouatta, C Floristean, S Kadyan, Q Xia, W Gerecke, ... Nature Methods, 1-11, 2024 | 222 | 2024 |
| Development of a protein–ligand extended connectivity (PLEC) fingerprint and its application for binding affinity predictions M Wójcikowski, M Kukiełka, MM Stepniewska-Dziubinska, P Siedlecki Bioinformatics 35 (8), 1334-1341, 2019 | 145 | 2019 |
| Fungal lifestyle reflected in serine protease repertoire A Muszewska, MM Stepniewska-Dziubinska, K Steczkiewicz, ... Scientific Reports 7 (1), 9147, 2017 | 114 | 2017 |
| Improving detection of protein-ligand binding sites with 3D segmentation MM Stepniewska-Dziubinska, P Zielenkiewicz, P Siedlecki Scientific reports 10 (1), 5035, 2020 | 108 | 2020 |
| Transposable elements contribute to fungal genes and impact fungal lifestyle A Muszewska, K Steczkiewicz, M Stepniewska-Dziubinska, K Ginalski Scientific Reports 9 (1), 4307, 2019 | 99 | 2019 |
| Cut-and-paste transposons in fungi with diverse lifestyles A Muszewska, K Steczkiewicz, M Stepniewska-Dziubinska, K Ginalski Genome biology and evolution 9 (12), 3463-3477, 2017 | 61 | 2017 |
| DeCAF—discrimination, comparison, alignment tool for 2d PHarmacophores MM Stepniewska-Dziubinska, P Zielenkiewicz, P Siedlecki Molecules 22 (7), 1128, 2017 | 10 | 2017 |
| Two faces of machine learning scoring functions-model complexity vs feature engineering M Wojcikowski, M Kukielka, M Stepniewska-Dziubinska, P Siedlecki ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 256, 2018 | 1 | 2018 |
| Transposable elements contribute to fungal genes and impact fungal lifestyle A Muszewska, K Steczkiewicz, M Stepniewska-Dziubinska, K Ginalski MEDICAL MYCOLOGY 56, S48-S48, 2018 | | 2018 |
