| Role of nanoscale antigen organization on B-cell activation probed using DNA origami R Veneziano, TJ Moyer, MB Stone, EC Wamhoff, BJ Read, S Mukherjee, ... Nature nanotechnology 15 (8), 716-723, 2020 | 371 | 2020 |
| Autonomously designed free-form 2D DNA origami H Jun, F Zhang, T Shepherd, S Ratanalert, X Qi, H Yan, M Bathe Science advances 5 (1), eaav0655, 2019 | 160 | 2019 |
| Automated sequence design of 3D polyhedral wireframe DNA origami with honeycomb edges H Jun, TR Shepherd, K Zhang, WP Bricker, S Li, W Chiu, M Bathe ACS nano 13 (2), 2083-2093, 2019 | 131 | 2019 |
| Random access DNA memory using Boolean search in an archival file storage system JL Banal, TR Shepherd, J Berleant, H Huang, M Reyes, CM Ackerman, ... Nature materials 20 (9), 1272-1280, 2021 | 111 | 2021 |
| In vitro synthesis of gene-length single-stranded DNA R Veneziano, TR Shepherd, S Ratanalert, L Bellou, C Tao, M Bathe Scientific reports 8 (1), 6548, 2018 | 100 | 2018 |
| A novel pathway spatiotemporally activates Rac1 and redox signaling in response to fluid shear stress Y Liu, C Collins, WB Kiosses, AM Murray, M Joshi, TR Shepherd, ... Journal of Cell Biology 201 (6), 863-873, 2013 | 80 | 2013 |
| Programming structured DNA assemblies to probe biophysical processes EC Wamhoff, JL Banal, WP Bricker, TR Shepherd, MF Parsons, ... Annual review of biophysics 48 (1), 395-419, 2019 | 70 | 2019 |
| The Tiam1 PDZ domain couples to Syndecan1 and promotes cell–matrix adhesion TR Shepherd, SM Klaus, X Liu, S Ramaswamy, KA DeMali, EJ Fuentes Journal of molecular biology 398 (5), 730-746, 2010 | 69 | 2010 |
| Bioproduction of pure, kilobase-scale single-stranded DNA TR Shepherd, RR Du, H Huang, EC Wamhoff, M Bathe Scientific Reports 9 (1), 6121, 2019 | 56 | 2019 |
| Distinct ligand specificity of the Tiam1 and Tiam2 PDZ domains TR Shepherd, RL Hard, AM Murray, D Pei, EJ Fuentes Biochemistry 50 (8), 1296-1308, 2011 | 48 | 2011 |
| The structure of the Tiam1 PDZ domain/phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics X Liu, TR Shepherd, AM Murray, Z Xu, EJ Fuentes Structure 21 (3), 342-354, 2013 | 47 | 2013 |
| De novo design and synthesis of a 30-cistron translation-factor module TR Shepherd, L Du, J Liljeruhm, fnm Samudyata, J Wang, MOD Sjödin, ... Nucleic acids research 45 (18), 10895-10905, 2017 | 39 | 2017 |
| Structural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ AS Punekar, J Liljeruhm, TR Shepherd, AC Forster, M Selmer Nucleic acids research 41 (20), 9537-9548, 2013 | 33 | 2013 |
| Distinct roles for conformational dynamics in protein-ligand interactions X Liu, DC Speckhard, TR Shepherd, YJ Sun, SR Hengel, L Yu, CA Fowler, ... Structure 24 (12), 2053-2066, 2016 | 30 | 2016 |
| 3D RNA-scaffolded wireframe origami MF Parsons, MF Allan, S Li, TR Shepherd, S Ratanalert, K Zhang, ... Nature Communications 14 (1), 382, 2023 | 27 | 2023 |
| Structural and Thermodynamic Analysis of PDZ–Ligand Interactions TR Shepherd, EJ Fuentes Methods in enzymology 488, 81-100, 2011 | 23 | 2011 |
| Microbial production of pure single stranded nucleic acids T Shepherd, R Du, M Bathe US Patent 10,940,171, 2021 | 16 | 2021 |
| Crystal structure of RlmM, the 2′O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA AS Punekar, TR Shepherd, J Liljeruhm, AC Forster, M Selmer Nucleic acids research 40 (20), 10507-10520, 2012 | 15 | 2012 |
| Conformational dynamics and cooperativity drive the specificity of a protein-ligand interaction X Liu, LC Golden, JA Lopez, TR Shepherd, L Yu, EJ Fuentes Biophysical journal 116 (12), 2314-2330, 2019 | 14 | 2019 |
| Disrupting the ArcA regulatory network amplifies the fitness cost of tetracycline resistance in Escherichia coli ML Arrieta-Ortiz, M Pan, A Kaur, E Pepper-Tunick, V Srinivas, A Dash, ... Msystems 8 (1), e00904-22, 2023 | 12 | 2023 |