| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 814 | 2017 |
| Global phylogeography and ancient evolution of the widespread human gut virus crAssphage RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ... Nature microbiology 4 (10), 1727-1736, 2019 | 237 | 2019 |
| Accessing the SEED genome databases via Web services API: tools for programmers T Disz, S Akhter, D Cuevas, R Olson, R Overbeek, V Vonstein, R Stevens, ... BMC bioinformatics 11, 1-11, 2010 | 144 | 2010 |
| FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards PeerJ 2, e425, 2014 | 118 | 2014 |
| Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome L Boling, DA Cuevas, JA Grasis, HS Kang, B Knowles, K Levi, H Maughan, ... Gut Microbes 11 (4), 721-734, 2020 | 94 | 2020 |
| From DNA to FBA: how to build your own genome-scale metabolic model DA Cuevas, J Edirisinghe, CS Henry, R Overbeek, TG O’Connell, ... Frontiers in microbiology 7, 907, 2016 | 78 | 2016 |
| Prophage genomics reveals patterns in phage genome organization and replication HS Kang, K McNair, DA Cuevas, BA Bailey, AM Segall, RA Edwards BioRxiv, 114819, 2017 | 44 | 2017 |
| Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ... BMC genomics 15, 1-11, 2014 | 38 | 2014 |
| Cystic fibrosis rapid response: translating multi-omics data into clinically relevant information AG Cobián Güemes, YW Lim, RA Quinn, DJ Conrad, S Benler, ... MBio 10 (2), 10.1128/mbio. 00431-19, 2019 | 28 | 2019 |
| Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition YW Lim, DA Cuevas, GGZ Silva, K Aguinaldo, EA Dinsdale, AF Haas, ... PeerJ 2, e520, 2014 | 25 | 2014 |
| PMAnalyzer: a new web interface for bacterial growth curve analysis DA Cuevas, RA Edwards Bioinformatics 33 (12), 1905-1906, 2017 | 24 | 2017 |
| Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nat Microbiol 4: 1727–1736 RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ... | 22 | 2019 |
| Phage phenomics: physiological approaches to characterize novel viral proteins SE Sanchez, DA Cuevas, JE Rostron, TY Liang, CG Pivaroff, MR Haynes, ... Journal of Visualized Experiments: JoVE, 52854, 2015 | 19 | 2015 |
| Elucidating genomic gaps using phenotypic profiles DA Cuevas, D Garza, SE Sanchez, J Rostron, CS Henry, V Vonstein, ... F1000Research 3, 210, 2016 | 15 | 2016 |
| FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares. PeerJ 2: e425 GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards | 13 | 2014 |
| Towards predicting gut microbial metabolism: integration of flux balance analysis and untargeted metabolomics E Kuang, M Marney, D Cuevas, RA Edwards, EM Forsberg Metabolites 10 (4), 156, 2020 | 10 | 2020 |
| Benchmark data sets, software results and reference data for the first CAMI challenge A Sczyrba, P Hofman, P Belmann, D Koslicki, S Janssen, J Dröge, ... GigaScience Database, 2017 | 5 | 2017 |
| Growth Score: a single metric to define growth in 96-well phenotype assays DA Cuevas, RA Edwards PeerJ 6, e4681, 2018 | 3 | 2018 |
| Elucidating genomic gaps using phenotypic profiles [version 2; peer review: 1 approved, 1 approved with reservations] DA Cuevas, D Garza, SE Sanchez, J Rostron, CS Henry, V Vonstein, ... May, 2019 | 2 | 2019 |
| Real-Time Metagenomics DA Cuevas, JA Hoffman, RA Edwards Acsess Proceedings. Available: http://www. csrc. sdsu. edu/acsess/reports …, 2011 | 2 | 2011 |
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, Australia確認したメール アドレス: flinders.edu.au