| CHARMM: the biomolecular simulation program BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ... Journal of computational chemistry 30 (10), 1545-1614, 2009 | 9315 | 2009 |
| Protein structure-based drug design: from docking to molecular dynamics P Śledź, A Caflisch Current opinion in structural biology 48, 93-102, 2018 | 607 | 2018 |
| The robustness of pollination networks to the loss of species and interactions: a quantitative approach incorporating pollinator behaviour CN Kaiser‐Bunbury, S Muff, J Memmott, CB Müller, A Caflisch Ecology letters 13 (4), 442-452, 2010 | 559 | 2010 |
| Phenylalanine assembly into toxic fibrils suggests amyloid etiology in phenylketonuria L Adler-Abramovich, L Vaks, O Carny, D Trudler, A Magno, A Caflisch, ... Nature chemical biology 8 (8), 701-706, 2012 | 463 | 2012 |
| The protein folding network F Rao, A Caflisch Journal of molecular biology 342 (1), 299-306, 2004 | 436 | 2004 |
| Evaluation of a fast implicit solvent model for molecular dynamics simulations P Ferrara, J Apostolakis, A Caflisch Proteins: Structure, Function, and Bioinformatics 46 (1), 24-33, 2002 | 392 | 2002 |
| Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases F Rosenthal, KLH Feijs, E Frugier, M Bonalli, AH Forst, R Imhof, ... Nature structural & molecular biology 20 (4), 502-507, 2013 | 374 | 2013 |
| PARP1 ADP-ribosylates lysine residues of the core histone tails S Messner, M Altmeyer, H Zhao, A Pozivil, B Roschitzki, P Gehrig, ... Nucleic acids research 38 (19), 6350-6362, 2010 | 341 | 2010 |
| The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35 J Gsponer, U Haberthür, A Caflisch Proceedings of the National Academy of Sciences 100 (9), 5154-5159, 2003 | 323 | 2003 |
| Wordom: a program for efficient analysis of molecular dynamics simulations M Seeber, M Cecchini, F Rao, G Settanni, A Caflisch Bioinformatics 23 (19), 2625-2627, 2007 | 311 | 2007 |
| Interpreting the aggregation kinetics of amyloid peptides R Pellarin, A Caflisch Journal of molecular biology 360 (4), 882-892, 2006 | 298 | 2006 |
| FACTS: Fast analytical continuum treatment of solvation U Haberthür, A Caflisch Journal of computational chemistry 29 (5), 701-715, 2008 | 294 | 2008 |
| Multiple copy simultaneous search and construction of ligands in binding sites: application to inhibitors of HIV-1 aspartic proteinase A Caflisch, A Miranker, M Karplus Journal of medicinal chemistry 36 (15), 2142-2167, 1993 | 283 | 1993 |
| Predicting free energy changes using structural ensembles A Benedix, CM Becker, BL de Groot, A Caflisch, RA Böckmann Nature methods 6 (1), 3-4, 2009 | 276 | 2009 |
| Wordom: a user‐friendly program for the analysis of molecular structures, trajectories, and free energy surfaces M Seeber, A Felline, F Raimondi, S Muff, R Friedman, F Rao, A Caflisch, ... Journal of computational chemistry 32 (6), 1183-1194, 2011 | 272 | 2011 |
| Molecular dynamics in drug design H Zhao, A Caflisch European journal of medicinal chemistry 91, 4-14, 2015 | 256 | 2015 |
| Replica exchange molecular dynamics simulations of amyloid peptide aggregation M Cecchini, F Rao, M Seeber, A Caflisch The Journal of chemical physics 121 (21), 10748-10756, 2004 | 243 | 2004 |
| Prediction of aggregation rate and aggregation‐prone segments in polypeptide sequences GG Tartaglia, A Cavalli, R Pellarin, A Caflisch Protein science 14 (10), 2723-2734, 2005 | 238 | 2005 |
| Calculation of conformational transitions and barriers in solvated systems: Application to the alanine dipeptide in water J Apostolakis, P Ferrara, A Caflisch The Journal of chemical physics 110 (4), 2099-2108, 1999 | 238 | 1999 |
| Efficient modularity optimization by multistep greedy algorithm and vertex mover refinement P Schuetz, A Caflisch Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 77 (4 …, 2008 | 235 | 2008 |
Andreas VitalisUniversity of Zurich確認したメール アドレス: bioc.uzh.ch
