| Critical Assessment of Metagenome Interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 269 | 2022 |
| Data structures based on k-mers for querying large collections of sequencing data sets C Marchet, C Boucher, SJ Puglisi, P Medvedev, M Salson, R Chikhi Genome Research, 2020 | 119 | 2020 |
| SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ... Nucleic Acids Research 44 (19), e148-e148, 2016 | 102 | 2016 |
| REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets C Marchet, Z Iqbal, D Gautheret, M Salson, R Chikhi Bioinformatics 36 (Supplement_1), i177-i185, 2020 | 74 | 2020 |
| CONSENT: Scalable self-correction of long reads with multiple sequence alignment P Morisse, C Marchet, A Limasset, T Lecroq, A Lefebvre | 68* | 2019 |
| BLight: efficient exact associative structure for k-mers C Marchet, M Kerbiriou, A Limasset Bioinformatics, 2021 | 54* | 2021 |
| Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ... Briefings in Bioinformatics, 2019 | 46* | 2019 |
| Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ... Scientific reports 8 (1), 4307, 2018 | 44* | 2018 |
| A survey of mapping algorithms in the long-reads era K Sahlin, T Baudeau, B Cazaux, C Marchet Genome Biology 24 (1), 133, 2023 | 42 | 2023 |
| De novo clustering of long reads by gene from transcriptomics data C Marchet, L Lecompte, CD Silva, C Cruaud, JM Aury, J Nicolas, ... Nucleic acids research 47 (1), e2-e2, 2019 | 35* | 2019 |
| A resource-frugal probabilistic dictionary and applications in bioinformatics C Marchet, L Lecompte, A Limasset, L Bittner, P Peterlongo Discrete Applied Mathematics 274, 92-102, 2020 | 30* | 2020 |
| Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ... Algorithms for Molecular Biology 12 (1), 2, 2017 | 29* | 2017 |
| A de novo approach to disentangle partner identity and function in holobiont systems A Meng, C Marchet, E Corre, P Peterlongo, A Alberti, C Da Silva, ... Microbiome 6, 1-15, 2018 | 24 | 2018 |
| Scalable sequence database search using partitioned aggregated Bloom comb trees C Marchet, A Limasset Bioinformatics 39 (Supplement_1), i252-i259, 2023 | 20 | 2023 |
| ELECTOR: Evaluator for long reads correction methods C Marchet, P Morisse, L Lecompte, A Lefebvre, T Lecroq, P Peterlongo, ... NAR Genomics and Bioinformatics 2 (1), lqz015, 2020 | 15 | 2020 |
| Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ... GigaScience 5 (1), s13742-015-0105-2, 2016 | 11 | 2016 |
| Conway–Bromage–Lyndon (CBL): an exact, dynamic representation of k-mer sets I Martayan, B Cazaux, A Limasset, C Marchet Bioinformatics 40 (Supplement_1), i48-i57, 2024 | 8 | 2024 |
| Fractional hitting sets for efficient multiset sketching T Rouzé, I Martayan, C Marchet, A Limasset Algorithms for Molecular Biology 20 (1), 1, 2025 | 6* | 2025 |
| Advances in colored k-mer sets: essentials for the curious C Marchet arXiv preprint arXiv:2409.05214, 2024 | 3* | 2024 |
| Cdbgtricks: strategies to update a compacted de bruijn graph K Hannoush, C Marchet, P Peterlongo bioRxiv, 2024.05. 24.595676, 2024 | 3 | 2024 |
Antoine LimassetCNRS, Université de Lille, Laboratoire CRIStAL, Equipe Bonsai確認したメール アドレス: univ-lille.fr