Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations TA Wassenaar, HI Ingólfsson, RA Bockmann, DP Tieleman, SJ Marrink Journal of chemical theory and computation 11 (5), 2144-2155, 2015 | 1090 | 2015 |
Going backward: a flexible geometric approach to reverse transformation from coarse grained to atomistic models TA Wassenaar, K Pluhackova, RA Bockmann, SJ Marrink, DP Tieleman Journal of chemical theory and computation 10 (2), 676-690, 2014 | 714 | 2014 |
Effect of sodium chloride on a lipid bilayer RA Böckmann, A Hac, T Heimburg, H Grubmüller Biophysical journal 85 (3), 1647-1655, 2003 | 684 | 2003 |
Optimization of the OPLS-AA force field for long hydrocarbons SWI Siu, K Pluhackova, RA Böckmann Journal of Chemical theory and Computation 8 (4), 1459-1470, 2012 | 662 | 2012 |
Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations RA Böckmann, BL De Groot, S Kakorin, E Neumann, H Grubmüller Biophysical journal 95 (4), 1837-1850, 2008 | 359 | 2008 |
The multifaceted role of SNARE proteins in membrane fusion J Han, K Pluhackova, RA Böckmann Frontiers in physiology 8, 5, 2017 | 357 | 2017 |
Biomolecular simulations of membranes: physical properties from different force fields SWI Siu, R Vácha, P Jungwirth, RA Böckmann The Journal of chemical physics 128 (12), 2008 | 331 | 2008 |
Predicting free energy changes using structural ensembles A Benedix, CM Becker, BL de Groot, A Caflisch, RA Böckmann Nature methods 6 (1), 3-4, 2009 | 276 | 2009 |
Multistep binding of divalent cations to phospholipid bilayers: a molecular dynamics study RA Böckmann, H Grubmüller Angewandte Chemie-International Edition 43 (8), 1021-1024, 2004 | 248 | 2004 |
The closure of Pak1‐dependent macropinosomes requires the phosphorylation of CtBP1/BARS P Liberali, E Kakkonen, G Turacchio, C Valente, A Spaar, G Perinetti, ... The EMBO journal 27 (7), 970-981, 2008 | 232 | 2008 |
Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase RA Böckmann, H Grubmüller nature structural biology 9 (3), 198-202, 2002 | 220 | 2002 |
Effects of alkali cations and halide anions on the DOPC lipid membrane R Vácha, SWI Siu, M Petrov, RA Böckmann, J Barucha-Kraszewska, ... The journal of physical chemistry A 113 (26), 7235-7243, 2009 | 176 | 2009 |
A critical comparison of biomembrane force fields: structure and dynamics of model DMPC, POPC, and POPE bilayers K Pluhackova, SA Kirsch, J Han, L Sun, Z Jiang, T Unruh, RA Böckmann The Journal of Physical Chemistry B 120 (16), 3888-3903, 2016 | 161 | 2016 |
Membrane-mediated oligomerization of G protein coupled receptors and its implications for GPCR function S Gahbauer, RA Böckmann Frontiers in physiology 7, 494, 2016 | 144 | 2016 |
High-throughput simulations of dimer and trimer assembly of membrane proteins. The DAFT approach TA Wassenaar, K Pluhackova, A Moussatova, D Sengupta, SJ Marrink, ... Journal of chemical theory and computation 11 (5), 2278-2291, 2015 | 123 | 2015 |
Mechanism of interaction of monovalent ions with phosphatidylcholine lipid membranes R Vácha, P Jurkiewicz, M Petrov, ML Berkowitz, RA Bockmann, ... The Journal of Physical Chemistry B 114 (29), 9504-9509, 2010 | 116 | 2010 |
Membrane pore formation in atomistic and coarse-grained simulations SA Kirsch, RA Böckmann Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2266-2277, 2016 | 106 | 2016 |
Differential peptide dynamics is linked to major histocompatibility complex polymorphism T Pöhlmann, RA Böckmann, H Grubmuller, B Uchanska-Ziegler, ... Journal of Biological Chemistry 279 (27), 28197-28201, 2004 | 100 | 2004 |
Biomembranes in atomistic and coarse-grained simulations K Pluhackova, RA Böckmann Journal of physics: condensed matter 27 (32), 323103, 2015 | 96 | 2015 |
Dynamic cholesterol-conditioned dimerization of the G protein coupled chemokine receptor type 4 K Pluhackova, S Gahbauer, F Kranz, TA Wassenaar, RA Böckmann PLoS computational biology 12 (11), e1005169, 2016 | 94 | 2016 |