Is the general time-reversible model bad for molecular phylogenetics? JG Sumner, PD Jarvis, J Fernández-Sánchez, BT Kaine, MD Woodhams, ... Systematic biology 61 (6), 1069-1074, 2012 | 83 | 2012 |
Lie markov models JG Sumner, J Fernández-Sánchez, PD Jarvis Journal of theoretical biology 298, 16-31, 2012 | 77 | 2012 |
A new hierarchy of phylogenetic models consistent with heterogeneous substitution rates MD Woodhams, J Fernández-Sánchez, JG Sumner Systematic biology 64 (4), 638-650, 2015 | 40 | 2015 |
Markov invariants, plethysms, and phylogenetics JG Sumner, MA Charleston, LS Jermiin, PD Jarvis Journal of theoretical biology 253 (3), 601-615, 2008 | 35 | 2008 |
Low-parameter phylogenetic inference under the general Markov model BR Holland, PD Jarvis, JG Sumner Systematic biology 62 (1), 78-92, 2013 | 33 | 2013 |
Lie Markov models with purine/pyrimidine symmetry J Fernández-Sánchez, JG Sumner, PD Jarvis, MD Woodhams Journal of mathematical biology 70, 855-891, 2015 | 29 | 2015 |
Tensor rank, invariants, inequalities, and applications ES Allman, PD Jarvis, JA Rhodes, JG Sumner SIAM Journal on Matrix Analysis and Applications 34 (3), 1014-1045, 2013 | 29 | 2013 |
Markov invariants and the isotropy subgroup of a quartet tree JG Sumner, PD Jarvis Journal of theoretical biology 258 (2), 302-310, 2009 | 21 | 2009 |
The algebra of the general Markov model on phylogenetic trees and networks JG Sumner, BR Holland, PD Jarvis Bulletin of mathematical biology 74, 858-880, 2012 | 20 | 2012 |
Maximum likelihood estimates of pairwise rearrangement distances S Serdoz, A Egri-Nagy, J Sumner, BR Holland, PD Jarvis, MM Tanaka, ... Journal of theoretical biology 423, 31-40, 2017 | 19 | 2017 |
Notes on Markov embedding M Baake, J Sumner Linear Algebra and its Applications 594, 262-299, 2020 | 18 | 2020 |
A representation-theoretic approach to the calculation of evolutionary distance in bacteria JG Sumner, PD Jarvis, AR Francis Journal of Physics A: Mathematical and Theoretical 50 (33), 335601, 2017 | 18 | 2017 |
Path integral formulation and Feynman rules for phylogenetic branching models PD Jarvis, JD Bashford, JG Sumner Journal of Physics A: Mathematical and General 38 (44), 9621, 2005 | 18 | 2005 |
U (1)× U (1)× U (1) symmetry of the Kimura 3ST model and phylogenetic branching processes JD Bashford, PD Jarvis, JG Sumner, MA Steel Journal of Physics A: Mathematical and General 37 (8), L81, 2004 | 18 | 2004 |
Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach V Terauds, J Sumner Bulletin of mathematical biology 81, 535-567, 2019 | 17 | 2019 |
Using the tangle: a consistent construction of phylogenetic distance matrices for quartets JG Sumner, PD Jarvis Mathematical biosciences 204 (1), 49-67, 2006 | 17 | 2006 |
Entanglement invariants and phylogenetic branching JG Sumner, PD Jarvis Journal of mathematical biology 51, 18-36, 2005 | 16 | 2005 |
The ancient operational code is embedded in the amino acid substitution matrix and aaRS phylogenies JA Shore, BR Holland, JG Sumner, K Nieselt, PR Wills Journal of Molecular Evolution 88 (2), 136-150, 2020 | 14 | 2020 |
Multiplicatively closed Markov models must form Lie algebras JG Sumner The ANZIAM Journal 59 (2), 240-246, 2017 | 12 | 2017 |
Markov invariants for phylogenetic rate matrices derived from embedded submodels P Jarvis, J Sumner IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (3), 828-836, 2012 | 10 | 2012 |