Steven Salzberg

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183 件の論文

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Mihaela PerteaAssociate Professor, Johns Hopkins University確認したメールアドレス: jhu.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins University確認したメールアドレス: cs.jhu.edu
Daehwan KimOmphalos Lifesciences Inc確認したメールアドレス: omphaloslifesci.com
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of Washington確認したメールアドレス: uw.edu
Daniela PuiuJohns Hopkins University確認したメールアドレス: jhu.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins Unviersity確認したメールアドレス: jhu.edu
Mihai PopProfessor of Computer Science, University of Maryland, College Park確認したメールアドレス: umd.edu
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University of確認したメールアドレス: som.umaryland.edu
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIH確認したメールアドレス: nih.gov
Florian P BreitwieserPrincipal Software Engineer at SOPHiA Genetics確認したメールアドレス: jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins University確認したメールアドレス: cs.jhu.edu
David NealeUniversity California, Davis USDA確認したメールアドレス: ucdavis.edu
David R KelleyCalico Labs確認したメールアドレス: calicolabs.com
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of Maryland確認したメールアドレス: umd.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins University確認したメールアドレス: jhmi.edu
Brian HaasBroad Institute確認したメールアドレス: broadinstitute.org
Charles H. LangleyProfessor, University of California - Davis確認したメールアドレス: ucdavis.edu
Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and Ecology確認したメールアドレス: ucdavis.edu
Sreerama MurthyCEO & Chief Data Scientist, Quadratyx確認したメールアドレス: quadratyx.com
Derrick WoodBlackjack Biotechnologies確認したメールアドレス: cs.jhu.edu

フォロー

Steven Salzberg

Bloomberg Distinguished Professor, Johns Hopkins University

確認したメールアドレス: jhu.edu - ホームページ

Computational Biology Genomics Bioinformatics Metagenomics Biomedical Data Science


タイトル引用回数順公開年順タイトル順	引用先引用先	年
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	51754	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	24318	2009
The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, et al. Science 291 (5507), 1304-1351, 2001	20973	2001
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	19263	2015
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	16065	2010
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013	13679	2013
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	13579	2009
FLASH: fast length adjustment of short reads to improve genome assemblies T Magoč, SL Salzberg Bioinformatics 27 (21), 2957-2963, 2011	13457	2011
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	13307	2012
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. GI Arabidopsis Nature 408 (6814), 796, 2000	11334	2000
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg Nature biotechnology 33 (3), 290-295, 2015	10385	2015
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype D Kim, JM Paggi, C Park, C Bennett, SL Salzberg Nature biotechnology 37 (8), 907-915, 2019	9578	2019
Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5 (2), R12, 2004	5760	2004
Genome sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ... Nature 419 (6906), 498-511, 2002	5578	2002
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg Nature protocols 11 (9), 1650-1667, 2016	5525	2016
Kraken: ultrafast metagenomic sequence classification using exact alignments DE Wood, SL Salzberg Genome biology 15, 1-12, 2014	4620	2014
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4159	2005
Identifying bacterial genes and endosymbiont DNA with Glimmer AL Delcher, KA Bratke, EC Powers, SL Salzberg Bioinformatics 23 (6), 673-679, 2007	3304	2007
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9, 1-22, 2008	3035	2008
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	3006	1999

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