Data integration through brain atlasing: Human Brain Project tools and strategies IE Bjerke, M Øvsthus, EA Papp, SC Yates, L Silvestri, J Fiorilli, ... European Psychiatry 50, 70-76, 2018 | 52 | 2018 |
Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain IE Bjerke, SC Yates, A Laja, MP Witter, MA Puchades, JG Bjaalie, ... Iscience 24 (1), 2021 | 39 | 2021 |
Waxholm Space atlas of the rat brain: A 3D atlas supporting data analysis and integration H Kleven, IE Bjerke, F Clascá, HJ Groenewegen, JG Bjaalie, ... Nature methods 20 (11), 1822-1829, 2023 | 34 | 2023 |
DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas H Carey, M Pegios, L Martin, C Saleeba, AJ Turner, NA Everett, IE Bjerke, ... Nature Communications 14 (1), 5884, 2023 | 32 | 2023 |
Navigating the murine brain: toward best practices for determining and documenting neuroanatomical locations in experimental studies IE Bjerke, M Øvsthus, KA Andersson, CH Blixhavn, H Kleven, SC Yates, ... Frontiers in neuroanatomy 12, 82, 2018 | 20 | 2018 |
Database of literature derived cellular measurements from the murine basal ganglia IE Bjerke, MA Puchades, JG Bjaalie, TB Leergaard Scientific data 7 (1), 211, 2020 | 13 | 2020 |
DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains IE Bjerke, ER Cullity, K Kjelsberg, KM Charan, TB Leergaard, JH Kim Scientific Data 9 (1), 175, 2022 | 10 | 2022 |
Development of parvalbumin-expressing basket terminals in layer ii of the rat medial entorhinal cortex N Berggaard, IE Bjerke, AEB Paulsen, L Hoang, NET Skogaker, MP Witter, ... Eneuro 5 (3), 2018 | 8 | 2018 |
QuickNII: Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space MA Puchades, G Csucs, M Checinska, M Øvsthus, IE Bjerke, K Andersson, ... Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2017 | 7 | 2017 |
A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting H Kleven, I Reiten, CH Blixhavn, U Schlegel, M Øvsthus, EA Papp, ... Frontiers in Neuroinformatics 17, 1154080, 2023 | 6 | 2023 |
Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model B Gurdon, SC Yates, G Csucs, NE Groeneboom, N Hadad, ... Communications Biology 7 (1), 605, 2024 | 4 | 2024 |
Human Brain Project partnering projects meeting: status quo and outlook A Lorents, ME Colin, IE Bjerke, S Nougaret, L Montelisciani, M Diaz, ... eneuro 10 (9), 2023 | 4 | 2023 |
Scaling up cell-counting efforts in neuroscience through semi-automated methods IE Bjerke, SC Yates, H Carey, JG Bjaalie, TB Leergaard Iscience 26 (9), 2023 | 3 | 2023 |
Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space H Kleven, U Schlegel, HJ Groenewegen, TB Leergaard, IE Bjerke Scientific Data 11 (1), 1036, 2024 | 2 | 2024 |
DeMBA: a developmental atlas for navigating the mouse brain in space and time H Carey, H Kleven, M Øvsthus, SC Yates, G Csucs, MA Puchades, ... bioRxiv, 2024.06. 14.598876, 2024 | 2 | 2024 |
Quantifying cellular parameters across the murine brain: New practices for integrating and analysing neuroscience data using 3D brain atlases IE Bjerke | 2 | 2021 |
Population-averaged 3D isotropic serial two-photon tomography reference data for the P28 mouse brain (v2) H Carey, H Kleven, H Qu, TB Leergaard, IE Bjerke (No Title), 2024 | 1 | 2024 |
The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases CH Blixhavn, I Reiten, H Kleven, M Øvsthus, SC Yates, U Schlegel, ... Frontiers in neuroinformatics 18, 1284107, 2024 | 1 | 2024 |
Parvalbumin positive basket terminals in layer II of the rat medial entorhinal cortex: postnatal development studied by immuno-electron microscopy I Bjerke NTNU, 2016 | 1 | 2016 |
The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation IE Bjerke, H Carey, JG Bjaalie, TB Leergaard, JH Kim Neurochemistry International 182, 105899, 2025 | | 2025 |