| BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree CJ Norsigian, N Pusarla, JL McConn, JT Yurkovich, A Dräger, BO Palsson, ... Nucleic acids research 48 (D1), D402-D406, 2020 | 243 | 2020 |
| A workflow for generating multi-strain genome-scale metabolic models of prokaryotes CJ Norsigian, X Fang, Y Seif, JM Monk, BO Palsson Nature protocols 15 (1), 1-14, 2020 | 75 | 2020 |
| Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions ES Kavvas, Y Seif, JT Yurkovich, C Norsigian, S Poudel, WW Greenwald, ... BMC systems biology 12, 1-15, 2018 | 61 | 2018 |
| Functional annotation of enzyme-encoding genes using deep learning with transformer layers GB Kim, JY Kim, JA Lee, CJ Norsigian, BO Palsson, SY Lee Nature Communications 14 (1), 7370, 2023 | 50 | 2023 |
| iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE CJ Norsigian, E Kavvas, Y Seif, BO Palsson, JM Monk Frontiers in Genetics 9, 121, 2018 | 43 | 2018 |
| Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase–Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates CJ Norsigian, H Attia, R Szubin, AS Yassin, BØ Palsson, RK Aziz, ... Frontiers in cellular and infection microbiology 9, 161, 2019 | 34 | 2019 |
| Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic … CJ Norsigian, HA Danhof, CK Brand, N Oezguen, FS Midani, BO Palsson, ... NPJ systems biology and applications 6 (1), 31, 2020 | 25 | 2020 |
| Reconstruction and Validation of a Genome-Scale Metabolic Model of Streptococcus oralis (iCJ415), a Human Commensal and Opportunistic Pathogen CS Jensen, CJ Norsigian, X Fang, XC Nielsen, JJ Christensen, ... Frontiers in Genetics 11, 116, 2020 | 16 | 2020 |
| Pangenome flux balance analysis toward panphenomes CJ Norsigian, X Fang, BO Palsson, JM Monk The pangenome: diversity, dynamics and evolution of genomes, 219-232, 2020 | 16 | 2020 |
| Systems biology approach to functionally assess the Clostridioides difficile pangenome reveals genetic diversity with discriminatory power CJ Norsigian, HA Danhof, CK Brand, FS Midani, JT Broddrick, ... Proceedings of the National Academy of Sciences 119 (18), e2119396119, 2022 | 11 | 2022 |
| Mathematical models to study the biology of pathogens and the infectious diseases they cause JB Xavier, JM Monk, S Poudel, CJ Norsigian, AV Sastry, C Liao, J Bento, ... Iscience 25 (4), 2022 | 11 | 2022 |
| The pangenome: diversity, dynamics and evolution of genomes CJ Norsigian, X Fang, BO Palsson, JM Monk, H Tettelin, D Medini Springer, 2020 | 8 | 2020 |
| High-quality genome-scale models from error-prone, long-read assemblies JT Broddrick, R Szubin, CJ Norsigian, JM Monk, BO Palsson, ... Frontiers in Microbiology 11, 596626, 2020 | 3 | 2020 |
| DeepECtransformer: A Transformer-based Deep Learning Model for Enzyme Function Prediction GB KIM, JY KIM, JA LEE, CJ NORSIGIAN, BO PALSSON, W Ziling, ... 한국생물공학회 학술대회, 509-509, 2024 | | 2024 |
| Deep Learning Approach for Functional Annotation of Enzyme-encoding Genes GB KIM, JY KIM, JA LEE, CJ NORSIGIAN, BO PALSSON, SY LEE 한국생물공학회 학술대회, 249-249, 2024 | | 2024 |
| Functional Annotation of Enzyme Encoding Genes Using Deep Learning GB KIM, JY KIM, JA LEE, CJ NORSIGIAN, BO PALSSON, SY LEE 한국생물공학회 학술대회, 707-707, 2023 | | 2023 |
| Pan-Genome Enriched Analytics: Systems Biology Examination of the Diversity of Microbial Pathogens CJ Norsigian University of California, San Diego, 2021 | | 2021 |
| iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of CJ Norsigian, E Kavvas, Y Seif | | 2018 |
