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Lingling Jin
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A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome
S Perumal, CS Koh, L Jin, M Buchwaldt, EE Higgins, C Zheng, D Sankoff, ...
Nature plants 6 (8), 929-941, 2020
1332020
Buxus and Tetracentron genomes help resolve eudicot genome history
AS Chanderbali, L Jin, Q Xu, Y Zhang, J Zhang, S Jian, E Carroll, ...
Nature communications 13 (1), 643, 2022
312022
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
Y Hao, ME Mabry, PP Edger, M Freeling, C Zheng, L Jin, R VanBuren, ...
Genome research 31 (5), 799-810, 2021
312021
A Semi-Self-Supervised learning approach for wheat head detection using extremely small number of labeled samples
K Najafian, A Ghanbari, I Stavness, L Jin, GH Shirdel, F Maleki
Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2021
212021
The impact of COVID-19 on students’ marks: A Bayesian hierarchical modeling approach
J Tomal, S Rahmati, S Boroushaki, L Jin, E Ahmed
Metron 79, 57-91, 2021
142021
High contiguity long read assembly of Brassica nigra allows localization of active centromeres and provides insights into the ancestral Brassica genome
S Perumal, CS Koh, L Jin, M Buchwaldt, E Higgins, C Zheng, D Sankoff, ...
BioRxiv, 2020.02. 03.932665, 2020
142020
Validation of automated chromosome recovery in the reconstruction of ancestral gene order
Q Xu, L Jin, JH Leebens-Mack, D Sankoff
Algorithms 14 (6), 160, 2021
102021
Sequencing of Camelina neglecta, a diploid progenitor of the hexaploid oilseed Camelina sativa
R Chaudhary, CS Koh, S Perumal, L Jin, EE Higgins, S Kagale, MA Smith, ...
Plant Biotechnology Journal 21 (3), 521-535, 2023
92023
Semi-self-supervised learning for semantic segmentation in images with dense patterns
K Najafian, A Ghanbari, M Sabet Kish, M Eramian, GH Shirdel, I Stavness, ...
Plant Phenomics 5, 0025, 2023
82023
Predicting phenotypes from novel genomic markers using deep learning
S Sehrawat, K Najafian, L Jin
Bioinformatics Advances 3 (1), vbad028, 2023
72023
Ancestral flowering plant chromosomes and gene orders based on generalized adjacencies and chromosomal gene co-occurrences
Q Xu, L Jin, Y Zhang, X Zhang, C Zheng, JH Leebens-Mack, D Sankoff
Journal of Computational Biology 28 (11), 1156-1179, 2021
72021
RACCROCHE: Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences
Q Xu, L Jin, C Zheng, JH Leebens Mack, D Sankoff
International Conference on Computational Advances in Bio and Medical …, 2020
62020
A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome. Nat Plants 6: 929–941
S Perumal, CS Koh, L Jin, M Buchwaldt, EE Higgins, C Zheng, D Sankoff, ...
62020
From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes
Q Xu, L Jin, C Zheng, X Zhang, J Leebens-Mack, D Sankoff
Scientific Reports 13 (1), 6095, 2023
52023
Comprehensive-GWAS: a pipeline for genome-wide association studies utilizing cross-validation to assess the predictivity of genetic variations
G Dagasso, Y Yan, L Wang, L Li, R Kutcher, W Zhang, L Jin
2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020
52020
A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome. Nat Plants 6
S Perumal, CS Koh, L Jin, M Buchwaldt, EE Higgins, C Zheng, D Sankoff, ...
42020
Detection of Fusarium Damaged Kernels in Wheat Using Deep Semi-Supervised Learning on a Novel WheatSeedBelt Dataset
K Najafian, L Jin, HR Kutcher, M Hladun, S Horovatin, MA Oviedo-Ludena, ...
Proceedings of the IEEE/CVF International Conference on Computer Vision, 660-669, 2023
32023
AcrTransAct: Pre-trained Protein Transformer Models for the Detection of Type I Anti-CRISPR Activities
M Hasani, C N. Trost, N Timmerman, L Jin
Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023
22023
The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny
Q Xu, X Zhang, Y Zhang, C Zheng, JH Leebens-Mack, L Jin, D Sankoff
Journal of Bioinformatics and Computational Biology 19 (06), 2140008, 2021
22021
Computational identification of harmful mutation regions to the activity of transposable elements
L Jin, I McQuillan, L Li
BMC genomics 18, 1-15, 2017
22017
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