| Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers D Bang, S Lim, S Lee, S Kim Nature Communications 14 (1), 3570, 2023 | 64 | 2023 |
| DRPreter: interpretable anticancer drug response prediction using knowledge-guided graph neural networks and transformer J Shin, Y Piao, D Bang, S Kim, K Jo International Journal of Molecular Sciences 23 (22), 13919, 2022 | 31 | 2022 |
| On modeling and utilizing chemical compound information with deep learning technologies: A task-oriented approach S Lim, S Lee, Y Piao, MG Choi, D Bang, J Gu, S Kim Computational and Structural Biotechnology Journal 20, 4288-4304, 2022 | 13 | 2022 |
| Disco: Diffusion Schrödinger bridge for molecular conformer optimization D Lee, D Lee, D Bang, S Kim Proceedings of the AAAI Conference on Artificial Intelligence 38 (12), 13365 …, 2024 | 4 | 2024 |
| A survey on computational methods for investigation on ncRNA-disease association through the mode of action perspective D Bang, J Gu, J Park, D Jeong, B Koo, J Yi, J Shin, I Jung, S Kim, S Lee International Journal of Molecular Sciences 23 (19), 11498, 2022 | 4 | 2022 |
| A model-agnostic framework to enhance knowledge graph-based drug combination prediction with drug–drug interaction data and supervised contrastive learning J Gu, D Bang, J Yi, S Lee, DK Kim, S Kim Briefings in Bioinformatics 24 (5), bbad285, 2023 | 3 | 2023 |
| Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction D Bang, B Koo, S Kim Bioinformatics 40 (Supplement_1), i130-i139, 2024 | 1 | 2024 |
| MDTR: a knowledge-guided interpretable representation for quantifying liver toxicity at transcriptomic level I Sung, S Lee, D Bang, J Yi, S Lee, S Kim Frontiers in Pharmacology 15, 1398370, 2025 | | 2025 |
| Residue-Level Multiview Deep Learning for ATP Binding Site Prediction and Applications in Kinase Inhibitors J Lee, D Bang, S Kim Journal of Chemical Information and Modeling 65 (1), 50-61, 2024 | | 2024 |
| ChemAP: predicting drug approval with chemical structures before clinical trial phase by leveraging multi-modal embedding space and knowledge distillation C Cho, S Lee, D Bang, Y Piao, S Kim Scientific Reports 14 (1), 23010, 2024 | | 2024 |
| DGDRP: drug-specific gene selection for drug response prediction via re-ranking through propagating and learning biological network M Pak, D Bang, I Sung, S Kim, S Lee Frontiers in Genetics 15, 1441558, 2024 | | 2024 |
| BounDr. E: Predicting Drug-likeness through knowledge alignment and EM-like one-class boundary optimization D Bang, I Sung, Y Piao, S Lee, S Kim | | |
