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Payam Dibaeinia
Payam Dibaeinia
Scientist, Machine Learning in Biology
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SERGIO: a single-cell expression simulator guided by gene regulatory networks
P Dibaeinia, S Sinha
Cell Systems 11 (3), 252-271. e11, 2020
1222020
DNA origami–graphene hybrid nanopore for DNA detection
A Barati Farimani, P Dibaeinia, NR Aluru
ACS applied materials & interfaces 9 (1), 92-100, 2017
1022017
Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells [S]
J Roy, P Dibaeinia, TM Fan, S Sinha, A Das
Journal of lipid research 60 (2), 375-387, 2019
462019
Single-cell dissection of aggression in honeybee colonies
IM Traniello, SA Bukhari, P Dibaeinia, G Serrano, A Avalos, AC Ahmed, ...
Nature Ecology & Evolution 7 (8), 1232-1244, 2023
21*2023
FASTRAL: improving scalability of phylogenomic analysis
P Dibaeinia, S Tabe-Bordbar, T Warnow
Bioinformatics 37 (16), 2317-2324, 2021
162021
The liver X receptor is selectively modulated to differentially alter female mammary metastasis-associated myeloid cells
L Ma, HE Vidana Gamage, S Tiwari, C Han, MA Henn, N Krawczynska, ...
Endocrinology 163 (7), bqac072, 2022
112022
Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks
P Dibaeinia, S Sinha
Nucleic Acids Research 49 (18), 10309–10327, 2021
92021
Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse
AY Louie, JS Kim, J Drnevich, P Dibaeinia, H Koito, S Sinha, DB McKim, ...
Journal of neuroinflammation 20 (1), 190, 2023
62023
An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice
CH Seward, MC Saul, JM Troy, P Dibaeinia, H Zhang, S Sinha, LJ Stubbs
Plos one 17 (2), e0263632, 2022
32022
A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains
V Dubinkina, S Bhogale, PH Hsieh, P Dibaeinia, A Nambiar, S Maslov, ...
Microbiology Spectrum 12 (1), e02536-23, 2024
22024
Interpretable AI for inference of causal molecular relationships from omics data
P Dibaeinia, A Ojha, S Sinha
Science Advances 11 (7), eadk0837, 2025
1*2025
Influenza causes alterations to oligodendrocyte-specific transcripts and the myelin lipidome in the adult mouse central nervous system.
A Louie, J Kim, K Soto-Diaz, P Dibaeinia, H Koito, S Sinha, R Nowak, ...
12021
Transcriptional regulatory genomics: from mechanistic modeling to causal inference
P Dibaeinia
University of Illinois at Urbana-Champaign, 2023
2023
FASTRAL: improving scalability of phylogenomic analysis (vol 37, pg 2317, 2021)
P Dibaeinia, S Tabe-Bordbar, T Warnow
BIOINFORMATICS 39 (1), 2023
2023
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