SERGIO: a single-cell expression simulator guided by gene regulatory networks P Dibaeinia, S Sinha Cell Systems 11 (3), 252-271. e11, 2020 | 122 | 2020 |
DNA origami–graphene hybrid nanopore for DNA detection A Barati Farimani, P Dibaeinia, NR Aluru ACS applied materials & interfaces 9 (1), 92-100, 2017 | 102 | 2017 |
Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells [S] J Roy, P Dibaeinia, TM Fan, S Sinha, A Das Journal of lipid research 60 (2), 375-387, 2019 | 46 | 2019 |
Single-cell dissection of aggression in honeybee colonies IM Traniello, SA Bukhari, P Dibaeinia, G Serrano, A Avalos, AC Ahmed, ... Nature Ecology & Evolution 7 (8), 1232-1244, 2023 | 21* | 2023 |
FASTRAL: improving scalability of phylogenomic analysis P Dibaeinia, S Tabe-Bordbar, T Warnow Bioinformatics 37 (16), 2317-2324, 2021 | 16 | 2021 |
The liver X receptor is selectively modulated to differentially alter female mammary metastasis-associated myeloid cells L Ma, HE Vidana Gamage, S Tiwari, C Han, MA Henn, N Krawczynska, ... Endocrinology 163 (7), bqac072, 2022 | 11 | 2022 |
Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks P Dibaeinia, S Sinha Nucleic Acids Research 49 (18), 10309–10327, 2021 | 9 | 2021 |
Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse AY Louie, JS Kim, J Drnevich, P Dibaeinia, H Koito, S Sinha, DB McKim, ... Journal of neuroinflammation 20 (1), 190, 2023 | 6 | 2023 |
An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice CH Seward, MC Saul, JM Troy, P Dibaeinia, H Zhang, S Sinha, LJ Stubbs Plos one 17 (2), e0263632, 2022 | 3 | 2022 |
A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains V Dubinkina, S Bhogale, PH Hsieh, P Dibaeinia, A Nambiar, S Maslov, ... Microbiology Spectrum 12 (1), e02536-23, 2024 | 2 | 2024 |
Interpretable AI for inference of causal molecular relationships from omics data P Dibaeinia, A Ojha, S Sinha Science Advances 11 (7), eadk0837, 2025 | 1* | 2025 |
Influenza causes alterations to oligodendrocyte-specific transcripts and the myelin lipidome in the adult mouse central nervous system. A Louie, J Kim, K Soto-Diaz, P Dibaeinia, H Koito, S Sinha, R Nowak, ... | 1 | 2021 |
Transcriptional regulatory genomics: from mechanistic modeling to causal inference P Dibaeinia University of Illinois at Urbana-Champaign, 2023 | | 2023 |
FASTRAL: improving scalability of phylogenomic analysis (vol 37, pg 2317, 2021) P Dibaeinia, S Tabe-Bordbar, T Warnow BIOINFORMATICS 39 (1), 2023 | | 2023 |