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Atul Deshpande
Atul Deshpande
Assistant Professor of Oncology, Johns Hopkins University
jhu.edu의 이메일 확인됨
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Network inference with Granger causality ensembles on single-cell transcriptomics
A Deshpande, LF Chu, R Stewart, A Gitter
Cell reports 38 (6), 2022
116*2022
From bench to bedside: Single-cell analysis for cancer immunotherapy
EF Davis-Marcisak, A Deshpande, GL Stein-O’Brien, WJ Ho, D Laheru, ...
Cancer cell 39 (8), 1062-1080, 2021
882021
Sparse dueling bandits
K Jamieson, S Katariya, A Deshpande, R Nowak
Artificial Intelligence and Statistics, 416-424, 2015
792015
Neoadjuvant cabozantinib and nivolumab convert locally advanced hepatocellular carcinoma into resectable disease with enhanced antitumor immunity
WJ Ho, Q Zhu, J Durham, A Popovic, S Xavier, J Leatherman, A Mohan, ...
Nature Cancer 2 (9), 891-903, 2021
762021
Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence
S Zhang, L Yuan, L Danilova, G Mo, Q Zhu, A Deshpande, ATF Bell, ...
Genome medicine 15 (1), 72, 2023
492023
Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer immunotherapy response
S Zhang, C Gong, A Ruiz-Martinez, H Wang, E Davis-Marcisak, ...
Immunoinformatics 1, 100002, 2021
302021
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces
A Deshpande, M Loth, DN Sidiropoulos, S Zhang, L Yuan, ATF Bell, ...
Cell systems 14 (4), 285-301. e4, 2023
272023
PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration
ATF Bell, JT Mitchell, AL Kiemen, M Lyman, K Fujikura, JW Lee, E Coyne, ...
Cell Systems 15 (8), 753-769. e5, 2024
21*2024
A general framework for pairs trading with a control-theoretic point of view
A Deshpande, BR Barmish
2016 IEEE Conference on Control Applications (CCA), 761-766, 2016
182016
A substitution-by-interpolation algorithm for watermarking audio
A Deshpande, KMM Prabhu
Signal Processing 89 (2), 218-225, 2009
172009
A generalization of the robust positive expectation theorem for stock trading via feedback control
A Deshpande, BR Barmish
2018 European control conference (ECC), 514-520, 2018
162018
Community-wide hackathons to identify central themes in single-cell multi-omics
KA Lê Cao, AJ Abadi, EF Davis-Marcisak, L Hsu, A Arora, A Coullomb, ...
Genome biology 22, 1-21, 2021
152021
Integration of Clinical Trial Spatial Multi-omics Analysis and Virtual Clinical Trials Enables Immunotherapy Response Prediction and Biomarker Discovery
S Zhang, A Deshpande, BK Verma, H Wang, H Mi, L Yuan, WJ Ho, ...
Cancer Research, 2024
13*2024
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
JAI Johnson, GL Stein-O’Brien, M Booth, R Heiland, F Kurtoglu, ...
bioRxiv, 2023
92023
OFDM PAR reduction by substituting original in-band subcarriers after clipping
SS Gunturi, A Deshpande
US Patent 8,848,813, 2014
82014
On simultaneous long-short stock trading controllers with cross-coupling
A Deshpande, JA Gubner, BR Barmish
IFAC-PapersOnLine 53 (2), 16989-16995, 2020
72020
Measurement error covariance in GNSS receiver circuitry, pseudoranges, reference position
A Deshpande, S Ramakrishnan, S Rao
US Patent 9,513,374, 2016
52016
Generating colorblind-friendly scatter plots for single-cell data
T Guha, EJ Fertig, A Deshpande
Elife 11, e82128, 2022
42022
Virtual patient analysis identifies strategies to improve the performance of predictive biomarkers for PD-1 blockade
T Arulraj, H Wang, A Deshpande, R Varadhan, LA Emens, EM Jaffee, ...
Proceedings of the National Academy of Sciences 121 (45), e2410911121, 2024
22024
Computational methods and biomarker discovery strategies for spatial proteomics: a review in immuno-oncology
H Mi, S Sivagnanam, WJ Ho, S Zhang, D Bergman, A Deshpande, ...
Briefings in bioinformatics 25 (5), bbae421, 2024
22024
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