| Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ... Journal of computer-aided molecular design 32, 175-185, 2018 | 130 | 2018 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 127 | 2019 |
| Finding the ΔΔG spot: Are predictors of binding affinity changes upon mutations in protein–protein interactions ready for it? C Geng, LC Xue, J Roel‐Touris, AMJJ Bonvin Wiley Interdisciplinary Reviews: Computational Molecular Science 9 (5), e1410, 2019 | 115 | 2019 |
| LightDock: a new multi-scale approach to protein–protein docking B Jiménez-García, J Roel-Touris, M Romero-Durana, M Vidal, ... Bioinformatics 34 (1), 49-55, 2018 | 109 | 2018 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 102 | 2021 |
| Modeling Antibody-Antigen Complexes by Information-Driven Docking F Ambrosetti, B Jiménez-García, J Roel-Touris, AMJJ Bonvin Structure, 2019 | 86 | 2019 |
| The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes RV Honorato, ME Trellet, B Jiménez-García, JJ Schaarschmidt, M Giulini, ... Nature protocols 19 (11), 3219-3241, 2024 | 65 | 2024 |
| Less is more: Coarse-grained integrative modeling of large biomolecular assemblies with HADDOCK J Roel-Touris, CG Don, RV Honorato, JP Rodrigues, AMJJ Bonvin Journal of Chemical Theory and Computation, 715268, 2019 | 54 | 2019 |
| Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 44 | 2023 |
| The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota V Pascal Andreu, J Roel-Touris, D Dodd, MA Fischbach, MH Medema Nucleic acids research 49 (W1), W263-W270, 2021 | 41 | 2021 |
| Integrative modeling of membrane-associated protein assemblies J Roel-Touris, B Jiménez-García, AMJJ Bonvin Nature communications 11 (1), 1-11, 2020 | 39 | 2020 |
| De novo design of immunoglobulin-like domains TM Chidyausiku, SR Mendes, JC Klima, M Nadal, U Eckhard, ... Nature communications 13 (1), 5661, 2022 | 38 | 2022 |
| MARTINI-based protein-DNA coarse-grained HADDOCKing RV Honorato, J Roel-Touris, AMJJ Bonvin Frontiers in molecular biosciences 6, 102, 2019 | 38 | 2019 |
| LightDock goes information-driven J Roel-Touris, AMJJ Bonvin, B Jiménez-García Bioinformatics, 595983, 2019 | 33 | 2019 |
| Coarse-grained (hybrid) integrative modeling of biomolecular interactions J Roel-Touris, AMJJ Bonvin Computational and structural biotechnology journal 18, 1182-1190, 2020 | 27 | 2020 |
| The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions B Jiménez-García, J Roel-Touris, D Barradas-Bautista Nucleic Acids Research 51 (W1), W298-W304, 2023 | 16 | 2023 |
| An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. PI Koukos, J Roel-Touris, F Ambrosetti, C Geng, J Schaarschmidt, ... Proteins: Structure, Function, and Bioinformatics,, 718122, 2019 | 16 | 2019 |
| Single-chain dimers from de novo immunoglobulins as robust scaffolds for multiple binding loops J Roel-Touris, M Nadal, E Marcos Nature communications 14 (1), 5939, 2023 | 7 | 2023 |
| The structural landscape of the immunoglobulin fold by large‐scale de novo design J Roel‐Touris, L Carcelén, E Marcos Protein Science 33 (4), e4936, 2024 | 2 | 2024 |
| On the study of biomolecular interactions at different resolutions: Does size matter? JL Roel Touris Utrecht University, 2021 | 1 | 2021 |