| Network propagation: a universal amplifier of genetic associations L Cowen, T Ideker, BJ Raphael, R Sharan Nature Reviews Genetics 18 (9), 551-562, 2017 | 663 | 2017 |
| Compact routing with minimum stretch LJ Cowen Journal of Algorithms 38 (1), 170-183, 2001 | 319 | 2001 |
| Defective colorings of graphs in surfaces: partitions into subgraphs of bounded valency LJ Cowen, RH Cowen, DR Woodall Journal of Graph Theory 10 (2), 187-195, 1986 | 311 | 1986 |
| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 293 | 2019 |
| Matt: local flexibility aids protein multiple structure alignment M Menke, B Berger, L Cowen PLoS computational biology 4 (1), e10, 2008 | 273 | 2008 |
| Defective coloring revisited L Cowen, W Goddard, CE Jesurum Journal of Graph Theory 24 (3), 205-219, 1997 | 178 | 1997 |
| Going the distance for protein function prediction: a new distance metric for protein interaction networks M Cao, H Zhang, J Park, NM Daniels, ME Crovella, LJ Cowen, B Hescott PloS one 8 (10), e76339, 2013 | 163 | 2013 |
| betawrap: Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens P Bradley, L Cowen, M Menke, J King, B Berger Proceedings of the National Academy of Sciences 98 (26), 14819-14824, 2001 | 147 | 2001 |
| New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence M Cao, CM Pietras, X Feng, KJ Doroschak, T Schaffner, J Park, H Zhang, ... Bioinformatics 30 (12), i219-i227, 2014 | 136 | 2014 |
| BETASCAN: probable β-amyloids identified by pairwise probabilistic analysis AW Bryan Jr, M Menke, LJ Cowen, SL Lindquist, B Berger PLoS computational biology 5 (3), e1000333, 2009 | 132 | 2009 |
| Near-linear time construction of sparse neighborhood covers B Awerbuch, B Berger, L Cowen, D Peleg SIAM Journal on Computing 28 (1), 263-277, 1998 | 132 | 1998 |
| D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions S Sledzieski, R Singh, L Cowen, B Berger Cell Systems 12 (10), 969-982. e6, 2021 | 117 | 2021 |
| The distinguishing number of the hypercube B Bogstad, LJ Cowen Discrete Mathematics 283 (1-3), 29-35, 2004 | 107 | 2004 |
| Contrastive learning in protein language space predicts interactions between drugs and protein targets R Singh, S Sledzieski, B Bryson, L Cowen, B Berger Proceedings of the National Academy of Sciences 120 (24), e2220778120, 2023 | 91 | 2023 |
| Array-to-array transfer of an artificial nose classifier SE Stitzel, LJ Cowen, KJ Albert, DR Walt Analytical Chemistry 73 (21), 5266-5271, 2001 | 91 | 2001 |
| Fast distributed network decompositions and covers B Awerbuch, B Berger, L Cowen, D Peleg Journal of parallel and distributed computing 39 (2), 105-114, 1996 | 81 | 1996 |
| Compact routing with name independence M Arias, LJ Cowen, KA Laing, R Rajaraman, O Taka Proceedings of the fifteenth annual ACM symposium on Parallel algorithms and …, 2003 | 79 | 2003 |
| Compact roundtrip routing in directed networks LJ Cowen, CG Wagner Journal of Algorithms 50 (1), 79-95, 2004 | 78 | 2004 |
| Approximation algorithms for the class cover problem AH Cannon, LJ Cowen Annals of Mathematics and Artificial Intelligence 40, 215-223, 2004 | 77 | 2004 |
| Compact routing on power law graphs with additive stretch A Brady, L Cowen 2006 Proceedings of the Eighth Workshop on Algorithm Engineering and …, 2006 | 73 | 2006 |
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