| Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013 | 5095 | 2013 |
| Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015 | 2625 | 2015 |
| Disentangling the effects of type 2 diabetes and metformin on the human gut microbiota K *Forslund, F *Hildebrand, T *Nielsen, G *Falony, E *Le Chatelier, ... Nature 528 (7581), 262, 2015 | 2222* | 2015 |
| Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016 | 2001 | 2016 |
| Structure and function of the global topsoil microbiome M *Bahram, F *Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature, 1, 2018 | 1918 | 2018 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 1158 | 2014 |
| Enterotypes in the landscape of gut microbial community composition PI *Costea, F *Hildebrand, A Manimozhiyan, F Bäckhed, MJ Blaser, ... Nature Microbiology 3 (1), 8, 2018 | 1015 | 2018 |
| Origin, Spread and Demography of the Mycobacterium tuberculosis Complex T Wirth, F Hildebrand, C Allix-Béguec, F Wölbeling, T Kubica, K Kremer, ... PLoS pathogens 4 (9), e1000160, 2008 | 690 | 2008 |
| Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients JR *Bedarf, F *Hildebrand, LP Coelho, S Sunagawa, M Bahram, F Goeser, ... Genome medicine 9 (1), 39, 2017 | 614 | 2017 |
| Durable coexistence of donor and recipient strains after fecal microbiota transplantation SS Li, A Zhu, V Benes, PI Costea, R Hercog, F Hildebrand, ... Science 352 (6285), 586-589, 2016 | 582 | 2016 |
| Meta-analysis of the Parkinson’s disease gut microbiome suggests alterations linked to intestinal inflammation S Romano, GM Savva, JR Bedarf, IG Charles, F Hildebrand, A Narbad npj Parkinson's Disease 7 (1), 27, 2021 | 545 | 2021 |
| Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi L Tedersoo, S Anslan, M Bahram, S Põlme, T Riit, I Liiv, U Kõljalg, ... MycoKeys 10, 1-43, 2015 | 533 | 2015 |
| Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice F *Hildebrand, TLA *Nguyen, B Brinkman, RG Yunta, B Cauwe, ... Genome biology 14 (1), R4, 2013 | 515 | 2013 |
| Evidence of selection upon genomic GC-content in bacteria F Hildebrand, A Meyer, A Eyre-Walker PLoS genetics 6 (9), e1001107, 2010 | 447 | 2010 |
| Gut microbiota linked to sexual preference and HIV infection M Noguera-Julian, M Rocafort, Y Guillén, J Rivera, M Casadellà, P Nowak, ... EBioMedicine 5, 135-146, 2016 | 429 | 2016 |
| Species–function relationships shape ecological properties of the human gut microbiome S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ... Nature microbiology 1 (8), 1-8, 2016 | 383 | 2016 |
| LotuS: an efficient and user-friendly OTU processing pipeline F Hildebrand, R Tadeo, AY Voigt, P Bork, J Raes Microbiome 2, 1-7, 2014 | 321 | 2014 |
| Global regulation of gene expression by OxyR in an important human opportunistic pathogen Q Wei, PN Le Minh, A Dötsch, F Hildebrand, W Panmanee, A Elfarash, ... Nucleic acids research 40 (10), 4320-4333, 2012 | 234 | 2012 |
| Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ... Gut 68 (7), 1180-1189, 2019 | 220 | 2019 |
| Tara Oceans coordinators S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015 | 156 | 2015 |
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