| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2520 | 2017 |
| Fundamentals of microbial community resistance and resilience A Shade, H Peter, SD Allison, DL Baho, M Berga, H Bürgmann, DH Huber, ... Frontiers in Microbiology 3, 2012 | 1555 | 2012 |
| Beyond the Venn diagram: the hunt for a core microbiome A Shade, J Handelsman Environmental Microbiology 14 (1), 4-12, 2012 | 1164 | 2012 |
| Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity A Shade, SE Jones, JG Caporaso, J Handelsman, R Knight, N Fierer, ... mBio 5 (4), e01371-14, 2014 | 630 | 2014 |
| Controls on soil microbial community stability under climate change FT De Vries, A Shade Frontiers in Microbiology 4, 265, 2013 | 487 | 2013 |
| Diversity is the question, not the answer A Shade The ISME Journal 11 (1), 1-6, 2017 | 460 | 2017 |
| Ecological patterns of seed microbiome diversity, transmission, and assembly A Shade, MA Jacques, M Barret Current Opinion in Microbiology 37, 15-22, 2017 | 404 | 2017 |
| A meta-analysis of changes in bacterial and archaeal communities with time A Shade, JG Caporaso, J Handelsman, R Knight, N Fierer The ISME journal 7 (8), 1493-1506, 2013 | 404 | 2013 |
| Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project JA Gilbert, F Meyer, D Antonopoulos, P Balaji, CT Brown, CT Brown, ... Standards in genomic sciences 3 (3), 243, 2010 | 325 | 2010 |
| Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 256 | 2016 |
| Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops KL Grady, JW Sorensen, N Stopnisek, J Guittar, A Shade Nature Communications 10, 4135, 2019 | 247 | 2019 |
| Lake microbial communities are resilient after a whole-ecosystem disturbance A Shade, JS Read, ND Youngblut, N Fierer, R Knight, TK Kratz, NR Lottig, ... The ISME journal 6 (12), 2153-2167, 2012 | 245 | 2012 |
| Unexpected diversity during community succession in the apple flower microbiome A Shade, PS McManus, J Handelsman MBio 4 (2), e00602-12, 2013 | 225 | 2013 |
| Culturing captures members of the soil rare biosphere A Shade, CS Hogan, AK Klimowicz, M Linske, PS McManus, ... Environmental Microbiology 14 (9), 2247-2252, 2012 | 224 | 2012 |
| Interannual dynamics and phenology of bacterial communities in a eutrophic lake A Shade, AD Kent, SE Jones, RJ Newton, EW Triplett, KD McMahon Limnology and Oceanography 52 (2), 487-494, 2007 | 217 | 2007 |
| The microbial ecology of flowers: an emerging frontier in phyllosphere research K Aleklett, M Hart, A Shade Botany, 2014 | 211 | 2014 |
| The under-ice microbiome of seasonally frozen lakes S Bertilsson, A Burgin, CC Carey, SB Fey, HP Grossart, LM Grubisic, ... Limnology and Oceanography 58 (6), 1998-2012, 2013 | 207 | 2013 |
| Abundance-occupancy distributions to prioritize plant core microbiome membership A Shade, N Stopnisek Current Opinion in Microbiology 49, 50-58, 2019 | 196 | 2019 |
| Expansion of the global RNA virome reveals diverse clades of bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... Cell 185 (21), 4023-4037. e18, 2022 | 172 | 2022 |
| Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance A Shade, JS Read, DG Welkie, TK Kratz, CH Wu, KD McMahon Environmental microbiology 13 (10), 2752-2767, 2011 | 167 | 2011 |