| Multi-omics analysis of CRISPRi-knockdowns identifies mechanisms that buffer decreases of enzymes in E. coli metabolism S Donati, M Kuntz, V Pahl, N Farke, D Beuter, T Glatter, JV Gomes-Filho, ... Cell Systems 12 (1), 56-67. e6, 2021 | 74 | 2021 |
| Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea JV Gomes-Filho, LS Zaramela, VCS Italiani, NS Baliga, RZN Vêncio, ... RNA biology 12 (5), 490-500, 2015 | 35 | 2015 |
| Characterization of the self-targeting Type IV CRISPR interference system in Pseudomonas oleovorans X Guo, M Sanchez-Londono, JV Gomes-Filho, R Hernandez-Tamayo, ... Nature Microbiology 7 (11), 1870-1878, 2022 | 26 | 2022 |
| Emergence of the primordial pre-60S from the 90S pre-ribosome S Ismail, D Flemming, M Thoms, JV Gomes-Filho, L Randau, R Beckmann, ... Cell reports 39 (1), 2022 | 24 | 2022 |
| Selective enrichment of slow-growing bacteria in a metabolism-wide CRISPRi library with a TIMER protein D Beuter, JV Gomes-Filho, L Randau, F Díaz-Pascual, K Drescher, H Link ACS Synthetic Biology 7 (12), 2775-2782, 2018 | 18 | 2018 |
| Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans F Benz, S Camara-Wilpert, J Russel, KG Wandera, R Čepaitė, ... Cell Host & Microbe 32 (6), 875-886. e9, 2024 | 17 | 2024 |
| The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1 JPP de Almeida, RZN Vêncio, APR Lorenzetti, F Ten-Caten, ... Genes 10 (4), 280, 2019 | 11 | 2019 |
| Conservation of archaeal C/D box sRNA-guided RNA modifications R Breuer, JV Gomes-Filho, L Randau Frontiers in Microbiology 12, 654029, 2021 | 10 | 2021 |
| RNA stabilization in hyperthermophilic archaea JV Gomes‐Filho, L Randau Annals of the New York Academy of Sciences 1447 (1), 88-96, 2019 | 10 | 2019 |
| Unique archaeal small RNAs JV Gomes-Filho, M Daume, L Randau Annual review of genetics 52 (1), 465-487, 2018 | 10 | 2018 |
| Identification of NAD-RNA species and ADPR-RNA decapping in Archaea JV Gomes-Filho, R Breuer, HG Morales-Filloy, N Pozhydaieva, A Borst, ... Nature Communications 14 (1), 7597, 2023 | 9 | 2023 |
| A genome-scale atlas reveals complex interplay of transcription and translation in an archaeon APR Lorenzetti, U Kusebauch, LS Zaramela, WJ Wu, JPP de Almeida, ... Msystems 8 (2), e00816-22, 2023 | 6 | 2023 |
| Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication M Sanchez-Londono, S Rust, R Hernández-Tamayo, JV Gomes-Filho, ... Nucleic Acids Research 52 (20), 12592-12603, 2024 | 3 | 2024 |
| Transcriptome profiling of Nudix hydrolase gene deletions in the thermoacidophilic archaeon Sulfolobus acidocaldarius R Breuer, JV Gomes-Filho, J Yuan, L Randau Frontiers in Microbiology 14, 1197877, 2023 | 1 | 2023 |
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