| The FoldX web server: an online force field J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano Nucleic acids research 33 (suppl_2), W382-W388, 2005 | 2812 | 2005 |
| Prediction of water and metal binding sites and their affinities by using the Fold-X force field JWH Schymkowitz, F Rousseau, IC Martins, J Ferkinghoff-Borg, F Stricher, ... Proceedings of the National Academy of Sciences 102 (29), 10147-10152, 2005 | 399 | 2005 |
| A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008 | 214 | 2008 |
| Combining experiments and simulations using the maximum entropy principle W Boomsma, J Ferkinghoff-Borg, K Lindorff-Larsen PLoS computational biology 10 (2), e1003406, 2014 | 204 | 2014 |
| SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs J Reumers, J Schymkowitz, J Ferkinghoff-Borg, F Stricher, L Serrano, ... Nucleic acids research 33 (suppl_1), D527-D532, 2005 | 190 | 2005 |
| SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks M Ander, P Beltrao, B Di Ventura, J Ferkinghoff-Borg, M Foglierini, ... Systems biology 1 (1), 129-138, 2004 | 188 | 2004 |
| Kinome-wide decoding of network-attacking mutations rewiring cancer signaling P Creixell, EM Schoof, CD Simpson, J Longden, CJ Miller, HJ Lou, ... Cell 163 (1), 202-217, 2015 | 182 | 2015 |
| A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009 | 131 | 2009 |
| Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations C Kiel, S Wohlgemuth, F Rousseau, J Schymkowitz, J Ferkinghoff-Borg, ... Journal of molecular biology 348 (3), 759-775, 2005 | 131 | 2005 |
| Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010 | 102 | 2010 |
| Similarity measures for protein ensembles K Lindorff-Larsen, J Ferkinghoff-Borg PloS one 4 (1), e4203, 2009 | 96 | 2009 |
| Experimental parameterization of an energy function for the simulation of unfolded proteins AB Norgaard, J Ferkinghoff-Borg, K Lindorff-Larsen Biophysical journal 94 (1), 182-192, 2008 | 89 | 2008 |
| Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11, 1-14, 2010 | 71 | 2010 |
| Quorum sensing regulation in Aeromonas hydrophila C Garde, T Bjarnsholt, M Givskov, TH Jakobsen, M Hentzer, A Claussen, ... Journal of molecular biology 396 (4), 849-857, 2010 | 60 | 2010 |
| Stop-and-go kinetics in amyloid fibrillation J Ferkinghoff-Borg, J Fonslet, CB Andersen, S Krishna, S Pigolotti, H Yagi, ... Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 82 (1 …, 2010 | 57 | 2010 |
| Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012 | 56 | 2012 |
| Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm IE Sánchez, P Beltrao, F Stricher, J Schymkowitz, J Ferkinghoff-Borg, ... PLoS computational biology 4 (4), e1000052, 2008 | 51 | 2008 |
| Optimized Monte Carlo analysis for generalized ensembles J Ferkinghoff-Borg The European Physical Journal B-Condensed Matter and Complex Systems 29, 481-484, 2002 | 50 | 2002 |
| PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ... Journal of computational chemistry 34 (19), 1697-1705, 2013 | 48 | 2013 |
| Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure T Lenaerts, J Ferkinghoff-Borg, F Stricher, L Serrano, JWH Schymkowitz, ... BMC structural biology 8, 1-15, 2008 | 45 | 2008 |
Thomas HamelryckProfessor in Machine Learning, BIO/DIKU, University of Copenhagenbio.ku.dk의 이메일 확인됨
