| Coarse grain models and the computer simulation of soft materials SO Nielsen, CF Lopez, G Srinivas, ML Klein Journal of Physics: Condensed Matter 16 (15), R481, 2004 | 634 | 2004 |
| Understanding nature's design for a nanosyringe CF Lopez, SO Nielsen, PB Moore, ML Klein Proceedings of the National Academy of Sciences 101 (13), 4431-4434, 2004 | 369 | 2004 |
| Hydrophobicity of protein surfaces: Separating geometry from chemistry N Giovambattista, CF Lopez, PJ Rossky, PG Debenedetti Proceedings of the National Academy of Sciences 105 (7), 2274-2279, 2008 | 298 | 2008 |
| Programming biological models in Python using PySB CF Lopez, JL Muhlich, JA Bachman, PK Sorger Molecular systems biology 9 (1), 646, 2013 | 279 | 2013 |
| Hydrogen bonding structure and dynamics of water at the dimyristoylphosphatidylcholine lipid bilayer surface from a molecular dynamics simulation CF Lopez, SO Nielsen, ML Klein, PB Moore The Journal of Physical Chemistry B 108 (21), 6603-6610, 2004 | 198 | 2004 |
| Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation PB Moore, CF Lopez, ML Klein Biophysical journal 81 (5), 2484-2494, 2001 | 194 | 2001 |
| Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014 | 167 | 2014 |
| A coarse grain model for n-alkanes parameterized from surface tension data SO Nielsen, CF Lopez, G Srinivas, ML Klein The Journal of chemical physics 119 (14), 7043-7049, 2003 | 162 | 2003 |
| Mechanistic elements of protein cold denaturation CF Lopez, RK Darst, PJ Rossky The Journal of Physical Chemistry B 112 (19), 5961-5967, 2008 | 147 | 2008 |
| Computer simulation studies of biomembranes using a coarse grain model CF Lopez, PB Moore, JC Shelley, MY Shelley, ML Klein Computer Physics Communications 147 (1-2), 1-6, 2002 | 129 | 2002 |
| An unbiased metric of antiproliferative drug effect in vitro LA Harris, PL Frick, SP Garbett, KN Hardeman, BB Paudel, CF Lopez, ... Nature methods 13 (6), 497-500, 2016 | 118 | 2016 |
| Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers DJ Wooten, SM Groves, DR Tyson, Q Liu, JS Lim, R Albert, CF Lopez, ... PLoS computational biology 15 (10), e1007343, 2019 | 112 | 2019 |
| PyDREAM: high-dimensional parameter inference for biological models in python EM Shockley, JA Vrugt, CF Lopez Bioinformatics 34 (4), 695-697, 2018 | 83 | 2018 |
| Probing membrane insertion activity of antimicrobial polymers via coarse-grain molecular dynamics CF Lopez, SO Nielsen, G Srinivas, WF DeGrado, ML Klein Journal of chemical theory and computation 2 (3), 649-655, 2006 | 83 | 2006 |
| MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery DJ Wooten, CT Meyer, ALR Lubbock, V Quaranta, CF Lopez Nature communications 12 (1), 4607, 2021 | 78* | 2021 |
| Structure and dynamics of model pore insertion into a membrane CF Lopez, SO Nielsen, B Ensing, PB Moore, ML Klein Biophysical Journal 88 (5), 3083-3094, 2005 | 76 | 2005 |
| Molecular dynamics investigations of lipid Langmuir monolayers using a coarse-grain model SO Nielsen, CF Lopez, PB Moore, JC Shelley, ML Klein The Journal of Physical Chemistry B 107 (50), 13911-13917, 2003 | 74 | 2003 |
| Charting the fragmented landscape of drug synergy CT Meyer, DJ Wooten, CF Lopez, V Quaranta Trends in pharmacological sciences 41 (4), 266-280, 2020 | 73 | 2020 |
| Transmembrane peptide-induced lipid sorting and mechanism of Lα-to-inverted phase transition using coarse-grain molecular dynamics SO Nielsen, CF Lopez, I Ivanov, PB Moore, JC Shelley, ML Klein Biophysical journal 87 (4), 2107-2115, 2004 | 66 | 2004 |
| Molecular dynamics investigation of membrane-bound bundles of the channel-forming transmembrane domain of viral protein U from the human immunodeficiency virus HIV-1 CF Lopez, M Montal, JK Blasie, ML Klein, PB Moore Biophysical journal 83 (3), 1259-1267, 2002 | 65 | 2002 |
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