| Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning C Weis, A Cuénod, B Rieck, O Dubuis, S Graf, C Lang, M Oberle, ... Nature Medicine 28 (1), 164-174, 2022 | 151 | 2022 |
| Factors associated with MALDI-TOF mass spectral quality of species identification in clinical routine diagnostics A Cuénod, F Foucault, V Pflüger, A Egli Frontiers in cellular and infection microbiology 11, 646648, 2021 | 64 | 2021 |
| Evaluation of rapid library preparation protocols for whole genome sequencing based outbreak investigation HMB Seth-Smith, F Bonfiglio, A Cuénod, J Reist, A Egli, D Wüthrich Frontiers in public health 7, 241, 2019 | 49 | 2019 |
| Brief validation of the novel GeneXpert Xpress SARS-CoV-2 PCR assay D Goldenberger, K Leuzinger, KK Sogaard, R Gosert, T Roloff, K Naegele, ... Journal of virological methods 284, 113925, 2020 | 46 | 2020 |
| Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra C Weis, M Horn, B Rieck, A Cuénod, A Egli, K Borgwardt Bioinformatics 36 (Supplement_1), i30-i38, 2020 | 34 | 2020 |
| Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study A Cuénod, D Wüthrich, HMB Seth-Smith, C Ott, C Gehringer, F Foucault, ... Genome medicine 13, 1-16, 2021 | 29 | 2021 |
| Quality of MALDI-TOF mass spectra in routine diagnostics: results from an international external quality assessment including 36 laboratories from 12 countries using 47 … A Cuénod, M Aerni, C Bagutti, B Bayraktar, ES Boz, CB Carneiro, ... Clinical microbiology and infection 29 (2), 190-199, 2023 | 20 | 2023 |
| Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans F Benz, S Camara-Wilpert, J Russel, KG Wandera, R Čepaitė, ... Cell Host & Microbe 32 (6), 875-886. e9, 2024 | 17 | 2024 |
| A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia PT Asare, CH Lee, V Hürlimann, Y Teo, A Cuénod, N Akduman, ... Frontiers in Microbiology 14, 1104707, 2023 | 14 | 2023 |
| Automatic discrimination of species within the Enterobacter cloacae complex using matrix-assisted laser desorption ionization–time of flight mass spectrometry and supervised … A Candela, A Guerrero-López, M Mateos, A Gómez-Asenjo, MJ Arroyo, ... Journal of clinical microbiology 61 (4), e01049-22, 2023 | 13 | 2023 |
| Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes D Goldenberger, KK Søgaard, A Cuénod, H Seth-Smith, D de Menezes, ... Antonie Van Leeuwenhoek 114 (8), 1315-1320, 2021 | 13 | 2021 |
| Genomic characterization of inpatient evolution of MRSA resistant to daptomycin, vancomycin and ceftaroline D Wüthrich, A Cuénod, V Hinic, M Morgenstern, N Khanna, A Egli, ... Journal of Antimicrobial Chemotherapy 74 (5), 1452-1454, 2019 | 12 | 2019 |
| Phage predation, disease severity, and pathogen genetic diversity in cholera patients N Madi, ET Cato, M Abu Sayeed, A Creasy-Marrazzo, A Cuénod, K Islam, ... Science 384 (6693), eadj3166, 2024 | 10 | 2024 |
| Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis A Cuénod, J Agnetti, HMB Seth-Smith, T Roloff, D Wälchli, D Shcherbakov, ... Genome Medicine 15 (1), 89, 2023 | 9 | 2023 |
| Diagnostic challenges within the Bacillus cereus-group: finding the beast without teeth V Muigg, A Cuénod, S Purushothaman, M Siegemund, M Wittwer, ... New microbes and new infections 49, 101040, 2022 | 9 | 2022 |
| Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs HMB Seth-Smith, F Imkamp, F Tagini, A Cuénod, R Hömke, K Jahn, ... Frontiers in microbiology 9, 3184, 2019 | 9 | 2019 |
| Functional characterization and phenotypic monitoring of human hematopoietic stem cell expansion and differentiation of monocytes and macrophages by whole-cell mass spectrometry G Vogel, A Cuénod, R Mouchet, A Strauss, C Daubenberger, V Pflüger, ... Stem cell research 26, 47-54, 2018 | 9 | 2018 |
| Phage predation and antibiotic exposure are inversely associated with disease severity and shape pathogen genetic diversity in cholera patients N Madi, ET Cato, MA Sayeed, K Islam, MIUI Khabir, MTR Bhuiyan, ... Biorxiv, 2023.06. 14.544933, 2023 | 5 | 2023 |
| Improved MALDI-TOF MS based antimicrobial resistance prediction through hierarchical stratification C Weis, B Rieck, S Balzer, A Cuénod, A Egli, K Borgwardt bioRxiv, 2022.04. 13.488198, 2022 | 5 | 2022 |
| Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome Med 13: 150 A Cuénod, D Wüthrich, HMB Seth-Smith, C Ott, C Gehringer, F Foucault, ... | 5 | 2021 |