| VARNA: Interactive drawing and editing of the RNA secondary structure K Darty, A Denise, Y Ponty Bioinformatics 25 (15), 1974, 2009 | 1490 | 2009 |
| Effective Rotation-invariant Point CNN with Spherical Harmonics kernels A Poulenard, MJ Rakotosaona, Y Ponty, M Ovsjanikov 2019 International Conference on 3D Vision (3DV), 47-56, 2019 | 125 | 2019 |
| ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony E Jacox, C Chauve, GJ Szöllősi, Y Ponty, C Scornavacca Bioinformatics 32 (13), 2056-2058, 2016 | 113 | 2016 |
| The SARS-CoV-2 subgenome landscape and its novel regulatory features D Wang, A Jiang, J Feng, G Li, D Guo, M Sajid, K Wu, Q Zhang, Y Ponty, ... Molecular cell 81 (10), 2135-2147. e5, 2021 | 111 | 2021 |
| Design of RNAs: comparing programs for inverse RNA folding A Churkin, MD Retwitzer, V Reinharz, Y Ponty, J Waldispühl, D Barash Briefings in bioinformatics 19 (2), 350-358, 2018 | 94 | 2018 |
| DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities F Ferrè, Y Ponty, WA Lorenz, P Clote Nucleic acids research 35 (suppl_2), W659-W668, 2007 | 88 | 2007 |
| GenRGenS: software for generating random genomic sequences and structures Y Ponty, M Termier, A Denise Bioinformatics 22 (12), 1534-1535, 2006 | 83 | 2006 |
| A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution V Reinharz, Y Ponty, J Waldispühl Bioinformatics 29 (13), i308-i315, 2013 | 69 | 2013 |
| Multi-dimensional Boltzmann Sampling of Languages Y Ponty, O Bodini Discrete Mathematics & Theoretical Computer Science, 2010 | 62* | 2010 |
| Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information A Lopes, S Sacquin-Mora, V Dimitrova, E Laine, Y Ponty, A Carbone PLoS Computational Biology, 2013 | 61 | 2013 |
| DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies W Duchemin, Y Anselmetti, M Patterson, Y Ponty, S Bérard, C Chauve, ... Genome Biology and Evolution 9 (5), 1312-1319, 2017 | 52 | 2017 |
| Asymptotics of RNA shapes WA Lorenz, Y Ponty, P Clote Journal of Computational Biology 15 (1), 31-63, 2008 | 52 | 2008 |
| Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy: the boustrophedon method Y Ponty Journal of mathematical biology 56 (1), 107-127, 2008 | 50 | 2008 |
| A global sampling approach to designing and reengineering RNA secondary structures A Levin, M Lis, Y Ponty, CW O’Donnell, S Devadas, B Berger, ... Nucleic acids research 40 (20), 10041-10052, 2012 | 49 | 2012 |
| Estimating seed sensitivity on homogeneous alignments G Kucherov, L Noé, Y Ponty Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering, 387-394, 2004 | 44 | 2004 |
| Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame J Deforges, S De Breyne, M Ameur, N Ulryck, N Chamond, A Saaidi, ... Nucleic acids research 45 (12), 7382-7400, 2017 | 42 | 2017 |
| Expected distance between terminal nucleotides of RNA secondary structures P Clote, Y Ponty, JM Steyaert Journal of mathematical biology 65 (3), 581-599, 2012 | 41 | 2012 |
| Fixed-parameter tractable sampling for RNA design with multiple target structures S Hammer, W Wang, S Will, Y Ponty BMC bioinformatics 20, 1-13, 2019 | 35 | 2019 |
| A combinatorial framework for designing (pseudoknotted) RNA algorithms Y Ponty, C Saule Algorithms in Bioinformatics: 11th International Workshop, WABI 2011 …, 2011 | 35 | 2011 |
| Impact of the energy model on the complexity of RNA folding with pseudoknots S Sheikh, R Backofen, Y Ponty Combinatorial Pattern Matching: 23rd Annual Symposium, CPM 2012, Helsinki …, 2012 | 34 | 2012 |
Alain DeniseUniversité Paris-Saclaylri.fr의 이메일 확인됨