| RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads P Novák, P Neumann, J Pech, J Steinhaisl, J Macas Bioinformatics 29 (6), 792-793, 2013 | 764 | 2013 |
| Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data P Novák, P Neumann, J Macas BMC bioinformatics 11, 1-12, 2010 | 548 | 2010 |
| A reference genome for pea provides insight into legume genome evolution J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie, G Aubert, PE Bayer, ... Nature genetics 51 (9), 1411-1422, 2019 | 483 | 2019 |
| Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula J Macas, P Neumann, A Navrátilová BMC genomics 8, 1-16, 2007 | 336 | 2007 |
| Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification P Neumann, P Novák, N Hoštáková, J Macas Mobile DNA 10, 1-17, 2019 | 333 | 2019 |
| Pea (Pisum sativum L.) in the Genomic Era P Smýkal, G Aubert, J Burstin, CJ Coyne, NTH Ellis, AJ Flavell, R Ford, ... Agronomy 2 (2), 74-115, 2012 | 326 | 2012 |
| TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads P Novák, L Ávila Robledillo, A Koblížková, I Vrbová, P Neumann, J Macas Nucleic acids research 45 (12), e111-e111, 2017 | 303 | 2017 |
| Repeatless and repeat-based centromeres in potato: implications for centromere evolution Z Gong, Y Wu, A Koblížková, GA Torres, K Wang, M Iovene, P Neumann, ... The Plant Cell 24 (9), 3559-3574, 2012 | 260 | 2012 |
| Loading of Arabidopsis Centromeric Histone CENH3 Occurs Mainly during G2 and Requires the Presence of the Histone Fold Domain I Lermontova, V Schubert, J Fuchs, S Klatte, J Macas, I Schubert The Plant Cell 18 (10), 2443-2451, 2006 | 244 | 2006 |
| Genetics of sex determination in flowering plants S Grant, A Houben, B Vyskot, J Siroky, WH Pan, J Macas, H Saedler Developmental Genetics 15 (3), 214-230, 1994 | 238 | 1994 |
| Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences MM Martis, S Klemme, AM Banaei-Moghaddam, FR Blattner, J Macas, ... Proceedings of the National Academy of Sciences 109 (33), 13343-13346, 2012 | 228 | 2012 |
| In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae J Macas, P Novák, J Pellicer, J Čížková, A Koblížková, P Neumann, ... PloS one 10 (11), e0143424, 2015 | 221 | 2015 |
| Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 P Novák, P Neumann, J Macas Nature Protocols 15 (11), 3745-3776, 2020 | 219 | 2020 |
| Plant centromeric retrotransposons: a structural and cytogenetic perspective P Neumann, A Navrátilová, A Koblížková, E Kejnovský, E Hřibová, ... Mobile DNA 2, 1-16, 2011 | 219 | 2011 |
| Analysis of nuclear DNA content and ploidy in higher plants DW Galbraith, GM Lambert, J Macas, J Dolezel Current protocols in cytometry 2 (1), 7.6. 1-7.6. 22, 1997 | 181 | 1997 |
| Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived … S Renny-Byfield, M Chester, A Kovařík, SC Le Comber, MA Grandbastien, ... Molecular biology and evolution 28 (10), 2843-2854, 2011 | 175 | 2011 |
| Stretching the rules: monocentric chromosomes with multiple centromere domains P Neumann, A Navratilova, E Schroeder-Reiter, A Koblížková, ... PLoS genetics 8 (6), e1002777, 2012 | 154 | 2012 |
| PlantSat: a specialized database for plant satellite repeats J Macas, T Meszaros, M Nouzova Bioinformatics 18 (1), 28-35, 2002 | 154 | 2002 |
| Genomic repeat abundances contain phylogenetic signal S Dodsworth, MW Chase, LJ Kelly, IJ Leitch, J Macas, P Novak, ... Systematic biology 64 (1), 112-126, 2015 | 150 | 2015 |
| Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size LJ Kelly, S Renny‐Byfield, J Pellicer, J Macas, P Novák, P Neumann, ... New Phytologist 208 (2), 596-607, 2015 | 146 | 2015 |
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