| Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC) C Lin, AS Garrett, B De Kumar, ER Smith, M Gogol, C Seidel, R Krumlauf, ... Genes & development 25 (14), 1486-1498, 2011 | 203 | 2011 |
| Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ... Cell Reports Medicine 3 (4), 2022 | 198 | 2022 |
| Poised RNA polymerase II changes over developmental time and prepares genes for future expression B Gaertner, J Johnston, K Chen, N Wallaschek, A Paulson, AS Garruss, ... Cell reports 2 (6), 1670-1683, 2012 | 117 | 2012 |
| A sandbox for prediction and integration of DNA, RNA, and proteins in single cells MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ... Thirty-fifth conference on neural information processing systems datasets …, 2021 | 108 | 2021 |
| Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons C Chaguza, A Coppi, R Earnest, D Ferguson, N Kerantzas, F Warner, ... Med 3 (5), 325-334. e4, 2022 | 88 | 2022 |
| Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection C Chaguza, AM Hahn, ME Petrone, S Zhou, D Ferguson, MI Breban, ... Cell Reports Medicine 4 (2), 2023 | 84 | 2023 |
| Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells B De Kumar, ME Parrish, BD Slaughter, JR Unruh, M Gogol, C Seidel, ... Genome research 25 (8), 1229-1243, 2015 | 68 | 2015 |
| Hox genes: Downstream “effectors” of retinoic acid signaling in vertebrate embryogenesis C Nolte, B De Kumar, R Krumlauf genesis 57 (7-8), e23306, 2019 | 61 | 2019 |
| HOXs and lincRNAs: Two sides of the same coin B De Kumar, R Krumlauf Science advances 2 (1), e1501402, 2016 | 61 | 2016 |
| Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells B De Kumar, HJ Parker, ME Parrish, JJ Lange, BD Slaughter, JR Unruh, ... Proceedings of the National Academy of Sciences 114 (23), 5838-5845, 2017 | 60 | 2017 |
| Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3 M Takaku, SA Grimm, B De Kumar, BD Bennett, PA Wade Nucleic acids research 48 (9), 4756-4768, 2020 | 56 | 2020 |
| Retinoid-Sensitive Epigenetic Regulation of the Hoxb Cluster Maintains Normal Hematopoiesis and Inhibits Leukemogenesis Cell stem cell 22 (5), 740-754, 2018 | 51 | 2018 |
| A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates HJ Parker, B De Kumar, SA Green, KD Prummel, C Hess, CK Kaufman, ... Nature communications 10 (1), 1189, 2019 | 48 | 2019 |
| Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis B De Kumar, HJ Parker, A Paulson, ME Parrish, J Zeitlinger, R Krumlauf Developmental Biology 432 (1), 151–164, 2017 | 48 | 2017 |
| HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets B De Kumar, HJ Parker, A Paulson, ME Parrish, I Pushel, NP Singh, ... Genome research 27 (9), 1501-1512, 2017 | 41 | 2017 |
| Assessment of clinical effectiveness of BNT162b2 COVID-19 vaccine in US adolescents CR Oliveira, LM Niccolai, H Sheikha, L Elmansy, CC Kalinich, ... JAMA network open 5 (3), e220935-e220935, 2022 | 27 | 2022 |
| A six-amino-acid motif is a major determinant in functional evolution of HOX1 proteins NP Singh, B De Kumar, A Paulson, ME Parrish, Y Zhang, L Florens, ... Genes & Development 34 (23-24), 1680-1696, 2020 | 25 | 2020 |
| The Hox protein conundrum: The “specifics” of DNA binding for Hox proteins and their partners B De Kumar, DC Darland Developmental biology 477, 284-292, 2021 | 15 | 2021 |
| Age-dependent impairment in antibody responses elicited by a homologous CoronaVac booster dose BA Filardi, VS Monteiro, PV Schwartzmann, V do Prado Martins, ... Science translational medicine 15 (683), eade6023, 2023 | 14 | 2023 |
| New England Variant Investigation Team R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ... Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New …, 2022 | 13 | 2022 |
