| MiXCR: software for comprehensive adaptive immunity profiling DA Bolotin, S Poslavsky, I Mitrophanov, M Shugay, IZ Mamedov, ... Nature methods 12 (5), 380-381, 2015 | 1640 | 2015 |
| VDJtools: unifying post-analysis of T cell receptor repertoires M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, ... PLoS computational biology 11 (11), e1004503, 2015 | 619 | 2015 |
| VDJdb: a curated database of T-cell receptor sequences with known antigen specificity M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ... Nucleic acids research 46 (D1), D419-D427, 2018 | 506 | 2018 |
| Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling OV Britanova, EV Putintseva, M Shugay, EM Merzlyak, MA Turchaninova, ... The Journal of Immunology 192 (6), 2689-2698, 2014 | 499 | 2014 |
| Towards error-free profiling of immune repertoires M Shugay, OV Britanova, EM Merzlyak, MA Turchaninova, IZ Mamedov, ... Nature methods 11 (6), 653-655, 2014 | 474 | 2014 |
| VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ... Nucleic acids research 48 (D1), D1057-D1062, 2020 | 369 | 2020 |
| Antigen receptor repertoire profiling from RNA-seq data DA Bolotin, S Poslavsky, AN Davydov, FE Frenkel, L Fanchi, ... Nature biotechnology 35 (10), 908-911, 2017 | 303 | 2017 |
| SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T cell receptors AS Shomuradova, MS Vagida, SA Sheetikov, KV Zornikova, D Kiryukhin, ... Immunity 53 (6), 1245-1257. e5, 2020 | 259 | 2020 |
| tcR: an R package for T cell receptor repertoire advanced data analysis VI Nazarov, MV Pogorelyy, EA Komech, IV Zvyagin, DA Bolotin, M Shugay, ... BMC bioinformatics 16, 1-5, 2015 | 257 | 2015 |
| MiTCR: software for T-cell receptor sequencing data analysis DA Bolotin, M Shugay, IZ Mamedov, EV Putintseva, MA Turchaninova, ... Nature methods 10 (9), 813-814, 2013 | 202 | 2013 |
| High-quality full-length immunoglobulin profiling with unique molecular barcoding MA Turchaninova, A Davydov, OV Britanova, M Shugay, V Bikos, ... Nature protocols 11 (9), 1599-1616, 2016 | 199 | 2016 |
| Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ... Nature immunology 18 (12), 1274-1278, 2017 | 180 | 2017 |
| A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance Y Feng, J van der Veeken, M Shugay, EV Putintseva, HU Osmanbeyoglu, ... Nature 528 (7580), 132-136, 2015 | 172 | 2015 |
| Dynamics of individual T cell repertoires: from cord blood to centenarians OV Britanova, M Shugay, EM Merzlyak, DB Staroverov, EV Putintseva, ... The Journal of Immunology 196 (12), 5005-5013, 2016 | 165 | 2016 |
| Pairing of T‐cell receptor chains via emulsion PCR MA Turchaninova, OV Britanova, DA Bolotin, M Shugay, EV Putintseva, ... European journal of immunology 43 (9), 2507-2515, 2013 | 158 | 2013 |
| Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing IV Zvyagin, MV Pogorelyy, ME Ivanova, EA Komech, M Shugay, ... Proceedings of the National Academy of Sciences 111 (16), 5980-5985, 2014 | 137 | 2014 |
| Detecting T cell receptors involved in immune responses from single repertoire snapshots MV Pogorelyy, AA Minervina, M Shugay, DM Chudakov, YB Lebedev, ... PLoS Biology 17 (6), e3000314, 2019 | 129 | 2019 |
| VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2 M Goncharov, D Bagaev, D Shcherbinin, I Zvyagin, D Bolotin, PG Thomas, ... Nature methods 19 (9), 1017-1019, 2022 | 128 | 2022 |
| Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions M Shugay, I Ortiz de Mendíbil, JL Vizmanos, FJ Novo Bioinformatics 29 (20), 2539-2546, 2013 | 115 | 2013 |
| Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases P Barennes, V Quiniou, M Shugay, ES Egorov, AN Davydov, ... Nature biotechnology 39 (2), 236-245, 2021 | 113 | 2021 |
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