| Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis LC Gillet, P Navarro, S Tate, H Röst, N Selevsek, L Reiter, R Bonner, ... Molecular & Cellular Proteomics 11 (6), O111. 016717, 2012 | 3108 | 2012 |
| OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ... Nature biotechnology 32 (3), 219, 2014 | 860 | 2014 |
| Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics U Distler, J Kuharev, P Navarro, Y Levin, H Schild, S Tenzer Nature Methods, 2013 | 514 | 2013 |
| Building high-quality assay libraries for targeted analysis of SWATH MS data OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ... Nature protocols 10 (3), 426, 2015 | 368 | 2015 |
| A multicenter study benchmarks software tools for label-free proteome quantification P Navarro, J Kuharev, LC Gillet, OM Bernhardt, B MacLean, HL Röst, ... Nature Biotechnology, 2016 | 351 | 2016 |
| Label-free quantification in ion mobility–enhanced data-independent acquisition proteomics U Distler, J Kuharev, P Navarro, S Tenzer nature protocols 11 (4), 795, 2016 | 331 | 2016 |
| Quantitative measurements of N‐linked glycoproteins in human plasma by SWATH‐MS Y Liu, R Hüttenhain, S Surinova, LCJ Gillet, J Mouritsen, R Brunner, ... Proteomics 13 (8), 1247-1256, 2013 | 231 | 2013 |
| General statistical framework for quantitative proteomics by stable isotope labeling P Navarro, M Trevisan-Herraz, E Bonzon-Kulichenko, E Núñez, ... Journal of proteome research 13 (3), 1234-1247, 2014 | 215 | 2014 |
| A refined method to calculate false discovery rates for peptide identification using decoy databases P Navarro, J Vázquez Journal of proteome research 8 (4), 1792-1796, 2009 | 208 | 2009 |
| Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry N Selevsek, CY Chang, LC Gillet, P Navarro, OM Bernhardt, L Reiter, ... Molecular & Cellular Proteomics 14 (3), 739-749, 2015 | 206 | 2015 |
| TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics HL Röst, Y Liu, G D'Agostino, M Zanella, P Navarro, G Rosenberger, ... Nature methods 13 (9), 777-783, 2016 | 191 | 2016 |
| Properties of Average Score Distributions of SEQUEST The Probability Ratio Method S Martínez-Bartolomé, P Navarro, F Martín-Maroto, D López-Ferrer, ... Molecular & Cellular Proteomics 7 (6), 1135-1145, 2008 | 182 | 2008 |
| Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics UH Toprak, LC Gillet, A Maiolica, P Navarro, A Leitner, R Aebersold Molecular & Cellular Proteomics 13 (8), 2056-2071, 2014 | 136 | 2014 |
| An open-source computational and data resource to analyze digital maps of immunopeptidomes E Caron, L Espona, DJ Kowalewski, H Schuster, N Ternette, A Alpízar, ... Elife 4, 2015 | 132 | 2015 |
| A robust method for quantitative high-throughput analysis of proteomes by 18O labeling E Bonzon-Kulichenko, D Pérez-Hernández, E Núñez, P Martínez-Acedo, ... Molecular & Cellular Proteomics 10 (1), M110. 003335, 2011 | 128 | 2011 |
| Statistical Model to Analyze Quantitative Proteomics Data Obtained by 18O/16O Labeling and Linear Ion Trap Mass Spectrometry Application to the Study of Vascular Endothelial … I Jorge, P Navarro, P Martínez-Acedo, E Núñez, H Serrano, A Alfranca, ... Molecular & Cellular Proteomics 8 (5), 1130-1149, 2009 | 89 | 2009 |
| In‐depth evaluation of software tools for data‐independent acquisition based label‐free quantification J Kuharev, P Navarro, U Distler, O Jahn, S Tenzer Proteomics 15 (18), 3140-3151, 2015 | 85 | 2015 |
| Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies Y Xuan, NW Bateman, S Gallien, S Goetze, Y Zhou, P Navarro, M Hu, ... Nature communications 11 (1), 1-12, 2020 | 67 | 2020 |
| The tegument protein pp65 of human cytomegalovirus acts as an optional scaffold protein that optimizes protein uploading into viral particles S Reyda, S Tenzer, P Navarro, W Gebauer, M Saur, S Krauter, N Büscher, ... Journal of virology 88 (17), 9633-9646, 2014 | 46 | 2014 |
| Quantitative proteomics by 2‐DE, 16O/18O labelling and linear ion trap mass spectrometry analysis of lymph nodes from piglets inoculated by porcine circovirus type 2 M Ramírez‐Boo, E Núnez, I Jorge, P Navarro, LT Fernandes, J Segalés, ... Proteomics 11 (17), 3452-3469, 2011 | 29 | 2011 |
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