| Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition IM Flyamer*, J Gassler*, M Imakaev*, HB Brandão, SV Ulianov, ... Nature 544 (7648), 110-114, 2017 | 762 | 2017 |
| Extensive heterogeneity and intrinsic variation in spatial genome organization EH Finn, G Pegoraro, HB Brandão, AL Valton, ME Oomen, J Dekker, ... Cell 176 (6), 1502-1515. e10, 2019 | 437 | 2019 |
| A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture J Gassler*, HB Brandão*, M Imakaev, IM Flyamer, S Ladstätter, ... The EMBO journal 36 (24), 3600-3618, 2017 | 366 | 2017 |
| Dynamics of CTCF and cohesin mediated chromatin looping revealed by live-cell imaging M Gabriele*, HB Brandão*, S Grosse-Holz*, A Jha, GM Dailey, C Cattoglio, ... Science 376 (6592), 496-501, 2022 | 333 | 2022 |
| Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus X Wang, HB Brandão, TBK Le, MT Laub, DZ Rudner Science 355 (6324), 524-527, 2017 | 291 | 2017 |
| Transcription shapes 3D chromatin organization by interacting with loop extrusion EJ Banigan, W Tang, AA van den Berg, RR Stocsits, G Wutz, HB Brandão, ... Proceedings of the National Academy of Sciences 120 (11), e2210480120, 2023 | 152 | 2023 |
| Chromosome organization by one-sided and two-sided loop extrusion EJ Banigan*, AA van den Berg*, HB Brandão*, JF Marko, LA Mirny, ... Elife 9, e53558, 2020 | 134 | 2020 |
| RNA polymerases as moving barriers to condensin loop extrusion HB Brandão, P Paul, AA van den Berg, DZ Rudner, X Wang, LA Mirny Proceedings of the National Academy of Sciences 116 (41), 20489-20499, 2019 | 127 | 2019 |
| MCM complexes are barriers that restrict cohesin-mediated loop extrusion BJH Dequeker, MJ Scherr, HB Brandão, J Gassler, S Powell, I Gaspar, ... Nature 606 (7912), 197-203, 2022 | 117 | 2022 |
| In vivo evidence for ATPase-dependent DNA translocation by the Bacillus subtilis SMC condensin complex X Wang, AC Hughes, HB Brandão, B Walker, C Lierz, JC Cochran, ... Molecular cell 71 (5), 841-847. e5, 2018 | 83 | 2018 |
| DNA-loop-extruding SMC complexes can traverse one another in vivo HB Brandão, Z Ren, X Karaboja, LA Mirny, X Wang Nature structural & molecular biology 28 (8), 642-651, 2021 | 80 | 2021 |
| Tracking and interpreting long-range chromatin interactions with super-resolution live-cell imaging HB Brandão*, M Gabriele*, AS Hansen, *equal contributions Current Opinion in Cell Biology 70, 18-26, 2021 | 70 | 2021 |
| Crumpled polymer with loops recapitulates key features of chromosome organization KE Polovnikov, HB Brandão, S Belan, B Slavov, M Imakaev, LA Mirny Physical Review X 13 (4), 041029, 2023 | 42 | 2023 |
| XerD unloads bacterial SMC complexes at the replication terminus X Karaboja, Z Ren, HB Brandão, P Paul, DZ Rudner, X Wang Molecular Cell 81 (4), 756-766. e8, 2021 | 35 | 2021 |
| Cortical polarity of the RING protein PAR-2 is maintained by exchange rate kinetics at the cortical-cytoplasmic boundary Y Arata, M Hiroshima, CG Pack, R Ramanujam, F Motegi, K Nakazato, ... Cell reports 16 (8), 2156-2168, 2016 | 34 | 2016 |
| mirnylab/pairtools: v0. 2.0 A Goloborodko, N Abdennur, S Venev, HB Brandao, G Fudenberg Zenodo, 2018 | 31 | 2018 |
| Measuring ligand–receptor binding kinetics and dynamics using k-space image correlation spectroscopy HB Brandao, H Sangji, E Pandžić, S Bechstedt, GJ Brouhard, ... Methods 66 (2), 273-282, 2014 | 21 | 2014 |
| DNA double-strand break end synapsis by DNA loop extrusion JH Yang, HB Brandão*, AS Hansen*, (*co-corresponding authors) Nature Communications 14 (1913), 1-14, 2023 | 20 | 2023 |
| Diffusion resonance of nanoconfined polymers AR Klotz, HB Brandao, WW Reisner Macromolecules 45 (4), 2122-2127, 2012 | 20 | 2012 |
| A high-throughput image correlation method for rapid analysis of fluorophore photoblinking and photobleaching rates S Sehayek, Y Gidi, V Glembockyte, HB Brandão, P François, G Cosa, ... ACS Nano 13 (10), 11955-11966, 2019 | 18 | 2019 |
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