| Clustal W and Clustal X version 2.0 MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ... bioinformatics 23 (21), 2947-2948, 2007 | 33198 | 2007 |
| Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ... Molecular systems biology 7 (1), 539, 2011 | 16617 | 2011 |
| The nf-core framework for community-curated bioinformatics pipelines PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ... Nature biotechnology 38 (3), 276-278, 2020 | 1975 | 2020 |
| LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ... Nucleic Acids Research, 2012 | 1311 | 2012 |
| Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 1269 | 2021 |
| Fast and sensitive mapping of nanopore sequencing reads with GraphMap I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan Nature communications 7 (1), 11307, 2016 | 419 | 2016 |
| Genomic landscape of lung adenocarcinoma in East Asians J Chen, H Yang, ASM Teo, LB Amer, FG Sherbaf, CQ Tan, JJS Alvarez, ... Nature genetics 52 (2), 177-186, 2020 | 385 | 2020 |
| Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ... Nature microbiology 1 (9), 1-10, 2016 | 384 | 2016 |
| A benchmark of multiple sequence alignment programs upon structural RNAs PP Gardner, A Wilm, S Washietl Nucleic acids research 33 (8), 2433-2439, 2005 | 369 | 2005 |
| In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ... Molecular cell 62 (4), 603-617, 2016 | 343 | 2016 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 340 | 2015 |
| A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients NM Nguyen, CNB Tran, LK Phung, KTH Duong, H le Anh Huynh, J Farrar, ... Journal of Infectious Diseases, 2012 | 289 | 2012 |
| Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls S Wang, KR Chng, A Wilm, S Zhao, KL Yang, N Nagarajan, J He Proceedings of the National Academy of Sciences 111 (33), 12103-12108, 2014 | 212 | 2014 |
| Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers L Wratten, A Wilm, J Göke Nature methods 18 (10), 1161-1168, 2021 | 202 | 2021 |
| An enhanced RNA alignment benchmark for sequence alignment programs A Wilm, I Mainz, G Steger Algorithms for molecular biology 1, 1-11, 2006 | 188 | 2006 |
| Large-scale whole-genome sequencing of three diverse Asian populations in Singapore D Wu, J Dou, X Chai, C Bellis, A Wilm, CC Shih, WWJ Soon, N Bertin, ... Cell 179 (3), 736-749. e15, 2019 | 177 | 2019 |
| INC-Seq: accurate single molecule reads using nanopore sequencing C Li, KR Chng, EJH Boey, AHQ Ng, A Wilm, N Nagarajan Gigascience 5 (1), s13742-016-0140-7, 2016 | 170 | 2016 |
| Sequence embedding for fast construction of guide trees for multiple sequence alignment G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins Algorithms for Molecular Biology 5, 1-11, 2010 | 168 | 2010 |
| R-Coffee: a method for multiple alignment of non-coding RNA A Wilm, DG Higgins, C Notredame Nucleic acids research 36 (9), e52-e52, 2008 | 143 | 2008 |
| Structure mapping of dengue and Zika viruses reveals functional long-range interactions RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ... Nature communications 10 (1), 1408, 2019 | 128 | 2019 |
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