| Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5, 1-10, 2011 | 306 | 2011 |
| TinkerCell: modular CAD tool for synthetic biology D Chandran, FT Bergmann, HM Sauro Journal of biological engineering 3, 1-17, 2009 | 239 | 2009 |
| Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011 | 176 | 2011 |
| COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15, 1-9, 2014 | 167 | 2014 |
| Antimony: a modular model definition language LP Smith, FT Bergmann, D Chandran, HM Sauro Bioinformatics 25 (18), 2452-2454, 2009 | 140 | 2009 |
| COPASI and its applications in biotechnology FT Bergmann, S Hoops, B Klahn, U Kummer, P Mendes, J Pahle, S Sahle Journal of biotechnology 261, 215-220, 2017 | 106 | 2017 |
| Software support for SBGN maps: SBGN-ML and LibSBGN MP Van Iersel, AC Villéger, T Czauderna, SE Boyd, FT Bergmann, A Luna, ... Bioinformatics 28 (15), 2016-2021, 2012 | 105 | 2012 |
| Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015 | 95 | 2015 |
| SBW-a modular framework for systems biology FT Bergmann, HM Sauro Proceedings of the 2006 Winter Simulation Conference, 1637-1645, 2006 | 94 | 2006 |
| The Systems Biology Markup Language (SBML): language specification for level 3 version 1 core M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ... Journal of integrative bioinformatics 12 (2), 382-549, 2015 | 80 | 2015 |
| Bifurcation discovery tool V Chickarmane, SR Paladugu, F Bergmann, HM Sauro Bioinformatics 21 (18), 3688-3690, 2005 | 74 | 2005 |
| Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 65 | 2016 |
| Computer-aided design of biological circuits using TinkerCell D Chandran, FT Bergmann, HM Sauro Bioengineered bugs 1 (4), 276-283, 2010 | 44 | 2010 |
| Comparing simulation results of SBML capable simulators FT Bergmann, HM Sauro Bioinformatics 24 (17), 1963-1965, 2008 | 41 | 2008 |
| SBtab: a flexible table format for data exchange in systems biology T Lubitz, J Hahn, FT Bergmann, E Noor, E Klipp, W Liebermeister Bioinformatics 32 (16), 2559-2561, 2016 | 39 | 2016 |
| Supporting the SBML layout extension A Deckard, FT Bergmann, HM Sauro Bioinformatics 22 (23), 2966-2967, 2006 | 38 | 2006 |
| The systems biology markup language (SBML) level 3 package: flux balance constraints BG Olivier, FT Bergmann Journal of integrative bioinformatics 12 (2), 660-690, 2015 | 36 | 2015 |
| Standards and ontologies in computational systems biology HM Sauro, FT Bergmann Essays in biochemistry 45, 211-222, 2008 | 36 | 2008 |
| The systems biology markup language (SBML) level 3 package: layout, version 1 core R Gauges, U Rost, S Sahle, K Wengler, FT Bergmann Journal of Integrative Bioinformatics 12 (2), 550-602, 2015 | 34 | 2015 |
| Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis R Großeholz, CC Koh, N Veith, T Fiedler, M Strauss, B Olivier, BC Collins, ... NPJ systems biology and applications 2 (1), 1-9, 2016 | 33 | 2016 |
Herbert M SauroUniversity of Washingtonu.washington.edu의 이메일 확인됨