| Rapid and noninvasive metabonomic characterization of inflammatory bowel disease JR Marchesi, E Holmes, F Khan, S Kochhar, P Scanlan, F Shanahan, ... Journal of proteome research 6 (2), 546-551, 2007 | 772 | 2007 |
| Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease PD Scanlan, F Shanahan, C O'Mahony, JR Marchesi Journal of clinical microbiology 44 (11), 3980-3988, 2006 | 468 | 2006 |
| Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and-independent analysis of faeces PD Scanlan, JR Marchesi The ISME journal 2 (12), 1183-1193, 2008 | 376 | 2008 |
| Culture‐independent analysis of the gut microbiota in colorectal cancer and polyposis PD Scanlan, F Shanahan, Y Clune, JK Collins, GC O'Sullivan, ... Environmental microbiology 10 (3), 789-798, 2008 | 340 | 2008 |
| The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota PD Scanlan, CR Stensvold, M Rajilić-Stojanović, HGHJ Heilig, ... FEMS microbiology ecology 90 (1), 326-330, 2014 | 338 | 2014 |
| Host–parasite coevolutionary arms races give way to fluctuating selection AR Hall, PD Scanlan, AD Morgan, A Buckling Ecology letters 14 (7), 635-642, 2011 | 316 | 2011 |
| Forgotten fungi—the gut mycobiome in human health and disease CE Huseyin, PW O’Toole, PD Cotter, PD Scanlan FEMS Microbiology Reviews 41 (4), 479-511, 2017 | 299 | 2017 |
| Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis PD Scanlan, F Shanahan, JR Marchesi BMC microbiology 8, 1-8, 2008 | 230 | 2008 |
| Blastocystis: getting to grips with our guileful guest PD Scanlan, CR Stensvold Trends in parasitology 29 (11), 523-529, 2013 | 169 | 2013 |
| Blastocystis: past pitfalls and future perspectives PD Scanlan Trends in parasitology 28 (8), 327-334, 2012 | 164 | 2012 |
| Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals PD Scanlan, F Shanahan, JR Marchesi FEMS microbiology ecology 69 (2), 213-221, 2009 | 151 | 2009 |
| Coevolution with bacteriophages drives genome-wide host evolution and constrains the acquisition of abiotic-beneficial mutations PD Scanlan, AR Hall, G Blackshields, VP Friman, MR Davis Jr, ... Molecular biology and evolution 32 (6), 1425-1435, 2015 | 128 | 2015 |
| Co-evolution with lytic phage selects for the mucoid phenotype of Pseudomonas fluorescens SBW25 PD Scanlan, A Buckling The ISME journal 6 (6), 1148-1158, 2012 | 126 | 2012 |
| Genetic basis of infectivity evolution in a bacteriophage PD Scanlan, AR Hall, LDC LOPEZ‐PASCUA, A Buckling Molecular Ecology 20 (5), 981-989, 2011 | 126 | 2011 |
| Bacteria-phage coevolution and the emergence of generalist pathogens AR Hall, PD Scanlan, A Buckling The American Naturalist 177 (1), 44-53, 2011 | 120 | 2011 |
| Bacteria–bacteriophage coevolution in the human gut: implications for microbial diversity and functionality PD Scanlan Trends in microbiology 25 (8), 614-623, 2017 | 117 | 2017 |
| The fungal frontier: a comparative analysis of methods used in the study of the human gut mycobiome CE Huseyin, RC Rubio, O O’Sullivan, PD Cotter, PD Scanlan Frontiers in Microbiology 8, 1432, 2017 | 113 | 2017 |
| Loss of social behaviours in populations of Pseudomonas aeruginosa infecting lungs of patients with cystic fibrosis N Jiricny, S Molin, K Foster, SP Diggle, PD Scanlan, M Ghoul, ... PloS one 9 (1), e83124, 2014 | 95 | 2014 |
| Development and application of a Blastocystis subtype-specific PCR assay reveals that mixed-subtype infections are common in a healthy human population PD Scanlan, CR Stensvold, PD Cotter Applied and environmental microbiology 81 (12), 4071-4076, 2015 | 89 | 2015 |
| Gut dysbiosis in cystic fibrosis PD Scanlan, A Buckling, W Kong, Y Wild, SV Lynch, F Harrison Journal of Cystic Fibrosis 11 (5), 454-455, 2012 | 71 | 2012 |