| Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic … C Viana-Niero, KVB Lima, ML Lopes, MC da Silva Rabello, LR Marsola, ... Journal of clinical microbiology 46 (3), 850-855, 2008 | 195 | 2008 |
| Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended … E Chimara, L Ferrazoli, SYM Ueky, MC Martins, AM Durham, RD Arbeit, ... BMC microbiology 8, 1-12, 2008 | 192 | 2008 |
| A transcriptome analysis of the Aedes aegypti vitellogenic fat body FM Feitosa, E Calvo, EF Merino, AM Durham, AA James, AG de Bianchi, ... Journal of Insect Science 6 (1), 6, 2006 | 114 | 2006 |
| Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop GM Souza, MA Van Sluys, CG Lembke, H Lee, GRA Margarido, CT Hotta, ... GigaScience 8 (12), giz129, 2019 | 102 | 2019 |
| DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence T Koide, PA Zaini, LM Moreira, RZN Vêncio, AY Matsukuma, AM Durham, ... Journal of Bacteriology 186 (16), 5442-5449, 2004 | 100 | 2004 |
| Computational methods in noncoding RNA research A Machado-Lima, HA Del Portillo, AM Durham Journal of mathematical biology 56, 15-49, 2008 | 94 | 2008 |
| Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization KH Ling, MA Rajandream, P Rivailler, A Ivens, SJ Yap, AMBN Madeira, ... Genome Research 17 (3), 311-319, 2007 | 63 | 2007 |
| EGene: a configurable pipeline generation system for automated sequence analysis AM Durham, AY Kashiwabara, FTG Matsunaga, PH Ahagon, F Rainone, ... Bioinformatics 21 (12), 2812-2813, 2005 | 62 | 2005 |
| Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases AR Paschoal, V Maracaja-Coutinho, JC Setubal, ZLP Simões, ... RNA biology 9 (3), 274-282, 2012 | 57 | 2012 |
| Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates L Albrecht, EF Merino, EHE Hoffmann, MU Ferreira, ... Molecular and biochemical parasitology 150 (2), 157-165, 2006 | 50 | 2006 |
| TRAP: automated classification, quantification and annotation of tandemly repeated sequences TJP Sobreira, AM Durham, A Gruber Bioinformatics 22 (3), 361-362, 2006 | 50 | 2006 |
| Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma P Severino, LS Oliveira, FM Andreghetto, N Torres, O Curioni, PM Cury, ... BMC medical genomics 8, 1-15, 2015 | 45 | 2015 |
| Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (The Eimeria SCARdb) S Fernandez, AM Katsuyama, AY Kashiwabara, AMBN Madeira, ... FEMS microbiology letters 238 (1), 183-188, 2004 | 44 | 2004 |
| GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data JMP Alves, AL de Oliveira, TOM Sandberg, JL Moreno-Gallego, ... Frontiers in Microbiology 7, 269, 2016 | 42 | 2016 |
| Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite EF Merino, C Fernandez-Becerra, AM Durham, JE Ferreira, VF Tumilasci, ... Molecular and biochemical parasitology 149 (1), 10-16, 2006 | 42 | 2006 |
| A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages J Novaes, LTLD Rangel, M Ferro, RY Abe, APS Manha, JCM de Mello, ... International journal for parasitology 42 (1), 39-48, 2012 | 37 | 2012 |
| Noncoding RNAs databases: current status and trends V Maracaja-Coutinho, AR Paschoal, JC Caris-Maldonado, PV Borges, ... Computational biology of non-coding RNA: methods and protocols, 251-285, 2019 | 35 | 2019 |
| CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts PG Nachtigall, AY Kashiwabara, AM Durham Briefings in Bioinformatics 22 (3), bbaa045, 2021 | 30 | 2021 |
| Use of profile hidden Markov models in viral discovery: current insights A Reyes, J Marcelo P Alves, AM Durham, A Gruber Advances in Genomics and Genetics, 29-45, 2017 | 26 | 2017 |
| A framework for run-time systems and its visual programming language AM Durham, RE Johnson Proceedings of the 11th ACM SIGPLAN conference on Object-oriented …, 1996 | 22 | 1996 |
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