| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1202 | 2019 |
| A systematic assessment of current genome-scale metabolic reconstruction tools SN Mendoza, BG Olivier, D Molenaar, B Teusink Genome biology 20, 1-20, 2019 | 239 | 2019 |
| Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models M Aite, M Chevallier, C Frioux, C Trottier, J Got, MP Cortés, SN Mendoza, ... PLoS computational biology 14 (5), e1006146, 2018 | 121 | 2018 |
| Oxygen response of the wine yeast Saccharomyces cerevisiae EC1118 grown under carbon-sufficient, nitrogen-limited enological conditions FF Aceituno, M Orellana, J Torres, S Mendoza, AW Slater, F Melo, ... Applied and environmental microbiology 78 (23), 8340-8352, 2012 | 88 | 2012 |
| Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production N Loira, S Mendoza, M Paz Cortés, N Rojas, D Travisany, AD Genova, ... BMC systems biology 11, 1-17, 2017 | 61 | 2017 |
| Genome-Scale Reconstruction of the Metabolic Network in Oenococcus oeni to Assess Wine Malolactic Fermentation SN Mendoza, PM Canon, Á Contreras, M Ribbeck, E Agosin Frontiers in microbiology 8, 534, 2017 | 55 | 2017 |
| Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment D Mandakovic, Á Cintolesi, J Maldonado, SN Mendoza, M Aïte, A Gaete, ... Scientific Reports 10 (1), 5560, 2020 | 37 | 2020 |
| Mapping the Physiological Response of Oenococcus oeni to Ethanol Stress Using an Extended Genome-Scale Metabolic Model A Contreras, M Ribbeck, GD Gutiérrez, PM Cañon, SN Mendoza, ... Frontiers in microbiology 9, 291, 2018 | 29 | 2018 |
| A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the Saccharomyces Genus in Fermentation D Henriques, R Minebois, SN Mendoza, LG Macías, R Pérez-Torrado, ... Msystems 6 (4), 10.1128/msystems. 00260-21, 2021 | 26 | 2021 |
| Analysis of Piscirickettsia salmonis Metabolism Using Genome-Scale Reconstruction, Modeling, and Testing MP Cortés, SN Mendoza, D Travisany, A Gaete, A Siegel, V Cambiazo, ... Frontiers in Microbiology 8, 2462, 2017 | 20 | 2017 |
| Ethanol-lactate transition of Lachancea thermotolerans is linked to nitrogen metabolism J Battjes, C Melkonian, SN Mendoza, A Haver, K Al-Nakeeb, A Koza, ... Food Microbiology 110, 104167, 2023 | 19 | 2023 |
| Yeast9: A Consensus Yeast Metabolic Model Enables Quantitative Analysis of Cellular Metabolism By Incorporating Big Data C Zhang, BJ Sánchez, F Li, CWQ Eiden, WT Scott Jr, UW Liebal, ... bioRxiv, 2023.12. 03.569754, 2023 | 7 | 2023 |
| A computational toolbox to investigate the metabolic potential and resource allocation in fission yeast P Grigaitis, DAJ Grundel, E van Pelt-KleinJan, M Isaku, G Xie, ... Msystems 7 (4), e00423-22, 2022 | 7 | 2022 |
| The pH-dependent lactose metabolism of Lactobacillus delbrueckii subsp. bulgaricus: An integrative view through a mechanistic computational model T Bendig, A Ulmer, L Luzia, S Müller, S Sahle, FT Bergmann, M Lösch, ... Journal of Biotechnology 374, 90-100, 2023 | 4 | 2023 |
| Metabolic behavior for a mutant Oenococcus oeni strain with high resistance to ethanol to survive under oenological multi-stress conditions Á Contreras, G Díaz, SN Mendoza, M Canto, E Agosín Frontiers in Microbiology 14, 1100501, 2023 | 4 | 2023 |
| Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation C Deantas-Jahn, SN Mendoza, C Licona-Cassani, C Orellana, PA Saa Applied Microbiology and Biotechnology 108 (1), 310, 2024 | 2 | 2024 |
| Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community C Zhang, BJ Sánchez, F Li, CWQ Eiden, WT Scott, UW Liebal, LM Blank, ... Molecular Systems Biology, 1-17, 2024 | 2 | 2024 |
| Metabolic Modeling of Wine Fermentation at Genome Scale SN Mendoza, PA Saa, B Teusink, E Agosin Computational Systems Biology in Medicine and Biotechnology: Methods and …, 2022 | 2 | 2022 |
| Metabolic modeling of fungi SN Mendoza, S Calhoun, B Teusink, MV Aguilar-Pontes Encyclopedia of Mycology, 394-405, 2021 | 2 | 2021 |
| A simple coloring method to distinguish colonies of the yeasts Lachancea thermotolerans and Saccharomyces cerevisiae on agar media C Melkonian, A Haver, M Wagner, Z Kalmoua, AS Hellmuth, SN Mendoza, ... bioRxiv, 2021.03. 15.434753, 2021 | 1 | 2021 |
B TeusinkProfessor of systems Biology, AIMMS, VU AmsterdanPatvirtintas el. paštas vu.nl
