Feng Ding

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Nikolay DokholyanG. Thomas Passananti ProfessorPatvirtintas el. paštas psu.edu
Pu Chun KeProfessor (Research), Monash UniversityPatvirtintas el. paštas monash.edu
Thomas Paul DavisAIBN, The University of QueenslandPatvirtintas el. paštas uq.edu.au
Yunxiang SunNingbo UniversityPatvirtintas el. paštas nbu.edu.cn
Kakinen AleksandrUniversity of QueenslandPatvirtintas el. paštas uq.edu.au
Ibrahim JavedThe University of QueenslandPatvirtintas el. paštas uq.edu.au
Emily H PilkingtonResearch Fellow, Monash Institute of Pharmaceutical SciencesPatvirtintas el. paštas monash.edu
Nicholas AndrikopoulosResearch Fellow, Department of Materials Science and Engineering, Monash UniversityPatvirtintas el. paštas monash.edu
H. Eugene StanleyProfessor of Physics, Boston UniversityPatvirtintas el. paštas bu.edu
Yuhuan LiAssociate Professor, Zhongshan Hospital, Fudan UniversityPatvirtintas el. paštas zs-hospital.sh.cn
Yanting XingPostdoctoral Researcher, Texas State UniversityPatvirtintas el. paštas txstate.edu
Praveen Nedumpully-GovindanPatvirtintas el. paštas utexas.edu
Sijie Lin 林思劼Tongji UniversityPatvirtintas el. paštas tongji.edu.cn
Pengyu ChenAssociate ProfessorPatvirtintas el. paštas auburn.edu
Eugene ShakhnovichProfessor of Chemistry Harvard UniversityPatvirtintas el. paštas chemistry.harvard.edu
Aparna Nandakumar, PhDPatvirtintas el. paštas monash.edu
Shantanu SharmaDirector AI and RPA at SVAM InternationalPatvirtintas el. paštas alumni.unc.edu
Ava FaridiMonash UniversityPatvirtintas el. paštas hudson.org.au
Guotao PengTongji University; Karolinska InstitutetPatvirtintas el. paštas tongji.edu.cn
Hugo SanabriaClemson UniversityPatvirtintas el. paštas clemson.edu

Stebėti

Feng Ding

Professor of Physics, Clemson University

Patvirtintas el. paštas clemson.edu - Pagrindinis puslapis

Computational biophysics Computational Nanoscience Amyloid Aggregation Multiscale Modeling


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Eris: an automated estimator of protein stability S Yin, F Ding, NV Dokholyan Nature methods 4 (6), 466-468, 2007	465	2007
Mechanism for the α‐helix to β‐hairpin transition F Ding, JM Borreguero, SV Buldyrey, HE Stanley, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 53 (2), 220-228, 2003	356	2003
Topological determinants of protein folding NV Dokholyan, L Li, F Ding, EI Shakhnovich Proceedings of the National Academy of Sciences 99 (13), 8637-8641, 2002	356	2002
Ab initio folding of proteins with all-atom discrete molecular dynamics F Ding, D Tsao, H Nie, NV Dokholyan Structure 16 (7), 1010-1018, 2008	354	2008
Automated minimization of steric clashes in protein structures S Ramachandran, P Kota, F Ding, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 79 (1), 261-270, 2011	344	2011
Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment I Kufareva, M Rueda, V Katritch, G Dock, RC Stevens, R Abagyan Structure 19 (8), 1108-1126, 2011	343	2011
Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms F Ding, S Sharma, P Chalasani, VV Demidov, NE Broude, NV Dokholyan Rna 14 (6), 1164-1173, 2008	328	2008
Implications of peptide assemblies in amyloid diseases PC Ke, MA Sani, F Ding, A Kakinen, I Javed, F Separovic, TP Davis, ... Chemical Society Reviews 46 (21), 6492-6531, 2017	320	2017
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ... Rna 18 (4), 610-625, 2012	310	2012
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008 M Michino, E Abola, G Dock, CL Brooks III, JS Dixon, J Moult, RC Stevens Nature Reviews Drug Discovery 8 (6), 455, 2009	309	2009
iFoldRNA: three-dimensional RNA structure prediction and folding S Sharma, F Ding, NV Dokholyan Bioinformatics 24 (17), 1951-1952, 2008	272	2008
Molecular dynamics simulation of amyloid β dimer formation B Urbanc, L Cruz, F Ding, D Sammond, S Khare, SV Buldyrev, HE Stanley, ... Biophysical journal 87 (4), 2310-2321, 2004	253	2004
Emergence of protein fold families through rational design F Ding, NV Dokholyan PLoS Comput Biol 2 (7), e85, 2006	241	2006
Engineered allosteric activation of kinases in living cells AV Karginov, F Ding, P Kota, NV Dokholyan, KM Hahn Nature biotechnology 28 (7), 743, 2010	238	2010
Discrete molecular dynamics: an efficient and versatile simulation method for fine protein characterization D Shirvanyants, F Ding, D Tsao, S Ramachandran, NV Dokholyan The journal of physical chemistry B 116 (29), 8375-8382, 2012	227	2012
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... RNA 23 (5), 655-672, 2017	204	2017
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015	199	2015
Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism F Ding, NV Dokholyan, SV Buldyrev, HE Stanley, EI Shakhnovich Journal of molecular biology 324 (4), 851-857, 2002	195	2002
Modeling backbone flexibility improves protein stability estimation S Yin, F Ding, NV Dokholyan Structure 15 (12), 1567-1576, 2007	193	2007
Dynamical roles of metal ions and the disulfide bond in Cu, Zn superoxide dismutase folding and aggregation F Ding, NV Dokholyan Proceedings of the National Academy of Sciences 105 (50), 19696-19701, 2008	182	2008

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