| Catalytic promiscuity and the evolution of new enzymatic activities PJ O'Brien, D Herschlag Chemistry & biology 6 (4), R91-R105, 1999 | 954 | 1999 |
| A single-molecule study of RNA catalysis and folding X Zhuang, LE Bartley, HP Babcock, R Russell, T Ha, D Herschlag, S Chu Science 288 (5473), 2048-2051, 2000 | 945 | 2000 |
| RNA chaperones and the RNA folding problem D Herschlag Journal of Biological Chemistry 270 (36), 20871-20874, 1995 | 903 | 1995 |
| Precision and functional specificity in mRNA decay Y Wang, CL Liu, JD Storey, RJ Tibshirani, D Herschlag, PO Brown Proceedings of the National Academy of Sciences 99 (9), 5860-5865, 2002 | 892 | 2002 |
| Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae Y Arava, Y Wang, JD Storey, CL Liu, PO Brown, D Herschlag Proceedings of the National Academy of Sciences 100 (7), 3889-3894, 2003 | 813 | 2003 |
| Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast AP Gerber, D Herschlag, PO Brown PLoS biology 2 (3), e79, 2004 | 800 | 2004 |
| Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system DJ Hogan, DP Riordan, AP Gerber, D Herschlag, PO Brown PLoS biology 6 (10), e255, 2008 | 726 | 2008 |
| Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins MT Woodside, WM Behnke-Parks, K Larizadeh, K Travers, D Herschlag, ... Proceedings of the National Academy of Sciences 103 (16), 6190-6195, 2006 | 568 | 2006 |
| Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA DG Hendrickson, DJ Hogan, HL McCullough, JW Myers, D Herschlag, ... PLoS biology 7 (11), e1000238, 2009 | 544 | 2009 |
| Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid MT Woodside, PC Anthony, WM Behnke-Parks, K Larizadeh, D Herschlag, ... Science 314 (5801), 1001-1004, 2006 | 494 | 2006 |
| Understanding nucleic acid–ion interactions J Lipfert, S Doniach, R Das, D Herschlag Annual review of biochemistry 83 (1), 813-841, 2014 | 490 | 2014 |
| The roles of structural dynamics in the cellular functions of RNAs LR Ganser, ML Kelly, D Herschlag, HM Al-Hashimi Nature reviews Molecular cell biology 20 (8), 474-489, 2019 | 484 | 2019 |
| Biological phosphoryl-transfer reactions: understanding mechanism and catalysis JK Lassila, JG Zalatan, D Herschlag Annual review of biochemistry 80 (1), 669-702, 2011 | 460 | 2011 |
| How to measure and evaluate binding affinities I Jarmoskaite, I AlSadhan, PP Vaidyanathan, D Herschlag Elife 9, e57264, 2020 | 444 | 2020 |
| Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site D Herschlag, TR Cech Biochemistry 29 (44), 10159-10171, 1990 | 423 | 1990 |
| SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments R Das, A Laederach, SM Pearlman, D Herschlag, RB Altman Rna 11 (3), 344-354, 2005 | 390 | 2005 |
| Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters MA Jonikas, RJ Radmer, A Laederach, R Das, S Pearlman, D Herschlag, ... Rna 15 (2), 189-199, 2009 | 378 | 2009 |
| A kinetic and thermodynamic framework for the hammerhead ribozyme reaction KJ Hertel, D Herschlag, OC Uhlenbeck Biochemistry 33 (11), 3374-3385, 1994 | 361 | 1994 |
| Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis KA Shepard, AP Gerber, A Jambhekar, PA Takizawa, PO Brown, ... Proceedings of the National Academy of Sciences 100 (20), 11429-11434, 2003 | 355 | 2003 |
| Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster AP Gerber, S Luschnig, MA Krasnow, PO Brown, D Herschlag Proceedings of the National Academy of Sciences 103 (12), 4487-4492, 2006 | 354 | 2006 |
