| TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines D Ershov, MS Phan, JW Pylvänäinen, SU Rigaud, L Le Blanc, ... Nature methods 19 (7), 829-832, 2022 | 716* | 2022 |
| Nestin regulates prostate cancer cell invasion by influencing the localisation and functions of FAK and integrins CL Hyder, G Lazaro, JW Pylvänäinen, MWG Roberts, SM Qvarnström, ... Journal of cell science 127 (10), 2161-2173, 2014 | 54 | 2014 |
| UBR5 Is Coamplified with MYC in Breast Tumors and Encodes an Ubiquitin Ligase That Limits MYC-Dependent Apoptosis X Qiao, Y Liu, ML Prada, AK Mohan, A Gupta, A Jaiswal, M Sharma, ... Cancer research 80 (7), 1414-1427, 2020 | 52 | 2020 |
| Live-cell imaging in the deep learning era JW Pylvänäinen, E Gómez-de-Mariscal, R Henriques, G Jacquemet Current Opinion in Cell Biology 85, 102271, 2023 | 29 | 2023 |
| Fast4DReg–fast registration of 4D microscopy datasets JW Pylvänäinen, RF Laine, BMS Saraiva, S Ghimire, G Follain, ... Journal of Cell Science 136 (4), jcs260728, 2023 | 14 | 2023 |
| DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible I Hidalgo-Cenalmor, JW Pylvänäinen, M G. Ferreira, CT Russell, A Saguy, ... Nature methods 21 (6), 925-927, 2024 | 10 | 2024 |
| CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data E Gómez-de-Mariscal, H Grobe, JW Pylvänäinen, L Xénard, R Henriques, ... Plos Biology 22 (8), e3002740, 2024 | 8* | 2024 |
| Recognising the importance and impact of Imaging Scientists: Global guidelines for establishing career paths within core facilities GD Wright, KA Thompson, Y Reis, J Bischof, PE Hockberger, MS Itano, ... Journal of Microscopy 294 (3), 397-410, 2024 | 7 | 2024 |
| Harnessing artificial intelligence to reduce phototoxicity in live imaging E Gómez-de-Mariscal, M Del Rosario, JW Pylvänäinen, G Jacquemet, ... Journal of Cell Science 137 (3), 2024 | 7 | 2024 |
| The crucial role of bioimage analysts in scientific research and publication BA Cimini, P Bankhead, R d'Antuono, E Fazeli, J Fernandez-Rodriguez, ... Journal of cell science 137 (20), 2024 | 1 | 2024 |
| Supporting Microscopy Learning with Ocul-AR, a Virtual and Augmented Reality-Powered Mobile Application JW Pylvänäinen, L Mairinoja, T Tuomisto, J Solis, DM Toivola, ... Proceedings of the Technology-Enhanced Learning in Laboratories workshop …, 2023 | 1 | 2023 |
| Quantitative comparison of tracking performance using TrackMate-Helper. JW Pylvänäinen, JY Tinevez, G Jacquemet, L Le Blanc, S Rigaud (No Title), 2022 | 1 | 2022 |
| Fast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers G Follain, S Ghimire, JW Pylvänäinen, M Vaitkevičiūtė, D Wurzinger, ... bioRxiv, 2024.09. 30.615654, 2024 | | 2024 |
| Bioimage Analysis for Life Scientists: Tools for Live Cell Imaging J Pylvänäinen Åbo Akademi-Åbo Akademi University, 2024 | | 2024 |
| An imaging scheme to study the flow dynamics of co-flow regimes in microfluidics: implications for nanoprecipitation W Inam, A Vladyka, JW Pylvänäinen, J Solis, D Tokic, P Kankaanpää, ... Lab on a Chip 24 (24), 5374-5383, 2024 | | 2024 |
| Fast4DReg–to the rescue of your drifty microscopy data JW Pylvänäinen | | 2023 |
| First person–Joanna Pylvänäinen JW Pylvänäinen | | 2023 |
| TrackMate v7, cell tracking for everyone with (almost) everything JW Pylvänäinen | | 2022 |
| If you can detect it, you can track it-recent TrackMate developments J Pylvänäinen | | 2022 |
| Biokuvantamisen uusi sukupolvi J Pylvänäinen, D Toivola Solubiologi, 34-35, 2021 | | 2021 |