| The Encyclopedia of DNA elements (ENCODE): data portal update CA Davis, BC Hitz, CA Sloan, ET Chan, JM Davidson, I Gabdank, ... Nucleic acids research 46 (D1), D794-D801, 2018 | 1850 | 2018 |
| New developments on the Encyclopedia of DNA Elements (ENCODE) data portal Y Luo, BC Hitz, I Gabdank, JA Hilton, MS Kagda, B Lam, Z Myers, P Sud, ... Nucleic acids research 48 (D1), D882-D889, 2020 | 729 | 2020 |
| The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ... Cell 167 (5), 1145-1149, 2016 | 563 | 2016 |
| Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ... Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010 | 316 | 2010 |
| Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont JA Hilton, RA Foster, H James Tripp, BJ Carter, JP Zehr, TA Villareal Nature communications 4 (1), 1767, 2013 | 122 | 2013 |
| Nitrogen fixation in the South Atlantic Gyre and the Benguela upwelling system JA Sohm, JA Hilton, AE Noble, JP Zehr, MA Saito, EA Webb Geophysical Research Letters 38 (16), 2011 | 106 | 2011 |
| CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data CZI Cell Science Program, S Abdulla, B Aevermann, P Assis, S Badajoz, ... Nucleic Acids Research, gkae1142, 2024 | 96 | 2024 |
| Mondo: Unifying diseases for the world, by the world NA Vasilevsky, NA Matentzoglu, S Toro, JE Flack IV, H Hegde, DR Unni, ... medRxiv, 2022.04. 13.22273750, 2022 | 84 | 2022 |
| Principles of metadata organization at the ENCODE data coordination center EL Hong, CA Sloan, ET Chan, JM Davidson, VS Malladi, JS Strattan, ... Database 2016, baw001, 2016 | 59 | 2016 |
| Metatranscriptomics of N2-fixing cyanobacteria in the Amazon River plume JA Hilton, BM Satinsky, M Doherty, B Zielinski, JP Zehr The ISME journal 9 (7), 1557-1569, 2015 | 37 | 2015 |
| The ENCODE portal as an epigenomics resource J Jou, I Gabdank, Y Luo, K Lin, P Sud, Z Myers, JA Hilton, MS Kagda, ... Current protocols in bioinformatics 68 (1), e89, 2019 | 29 | 2019 |
| Ecology and evolution of diatom-associated cyanobacteria through genetic analyses JA Hilton University of California, Santa Cruz, 2014 | 22 | 2014 |
| Surveying DNA Elements within Functional Genes of Heterocyst-Forming Cyanobacteria JA Hilton, JC Meeks, JP Zehr PloS one 11 (5), e0156034, 2016 | 20 | 2016 |
| SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata BC Hitz, LD Rowe, NR Podduturi, DI Glick, UK Baymuradov, VS Malladi, ... PloS one 12 (4), e0175310, 2017 | 17 | 2017 |
| Data navigation on the ENCODE portal MS Kagda, B Lam, C Litton, C Small, CA Sloan, E Spragins, F Tanaka, ... arXiv preprint arXiv:2305.00006, 2023 | 14 | 2023 |
| Prevention of data duplication for high throughput sequencing repositories I Gabdank, ET Chan, JM Davidson, JA Hilton, CA Davis, UK Baymuradov, ... Database 2018, bay008, 2018 | 9 | 2018 |
| Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data Y Wang, I Sarfraz, WK Teh, A Sokolov, BR Herb, HH Creasy, I Virshup, ... bioRxiv, 2023 | 4 | 2023 |
| MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data I Sarfraz, Y Wang, A Shastry, WK Teh, A Sokolov, BR Herb, HH Creasy, ... Genome Biology 25 (1), 205, 2024 | 1 | 2024 |
| Ecological aspects of nitrogen-fixing cyanobacteria illuminated by genomics and metagenomics JP Zehr, HJ Tripp, J Hilton, PH Moisander, R Foster Journal of Phycology 47 (Suppl. 2 Sp. Iss. SI), S1-S1, 2011 | 1 | 2011 |
| Data navigation on the ENCODE Portal B Hitz, M Kagda, B Lam, C Litton, C Small, C Sloan, E Spragins, F Tanaka, ... | | 2023 |