| A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut … M Leray, JY Yang, CP Meyer, SC Mills, N Agudelo, V Ranwez, JT Boehm, ... Frontiers in zoology 10, 1-14, 2013 | 1537 | 2013 |
| GenBank is a reliable resource for 21st century biodiversity research M Leray, N Knowlton, SL Ho, BN Nguyen, RJ Machida Proceedings of the National Academy of Sciences 116 (45), 22651-22656, 2019 | 188 | 2019 |
| Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda) RJ Machida, MU Miya, M Nishida, S Nishida Marine Biotechnology 4, 406-417, 2002 | 177 | 2002 |
| Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples RJ Machida, M Leray, SL Ho, N Knowlton Scientific data 4 (1), 1-7, 2017 | 174 | 2017 |
| PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences RJ Machida, N Knowlton Public Library of Science 7 (9), e46180, 2012 | 144 | 2012 |
| Large-scale gene rearrangements in the mitochondrial genomes of two calanoid copepods Eucalanus bungii and Neocalanus cristatus (Crustacea), with notes on … RJ Machida, MU Miya, M Nishida, S Nishida Gene 332, 71-78, 2004 | 111 | 2004 |
| Evidence for the grazing hypothesis: Grazing reduces phytoplankton responses of the HNLC ecosystem to iron enrichment in the western subarctic pacific (SEEDS II) A Tsuda, S Takeda, H Saito, J Nishioka, I Kudo, Y Nojiri, K Suzuki, ... Journal of Oceanography 63, 983-994, 2007 | 100 | 2007 |
| Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority JK Pearman, M Leray, R Villalobos, RJ Machida, ML Berumen, ... Scientific reports 8 (1), 8090, 2018 | 94 | 2018 |
| MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences M Leray, N Knowlton, RJ Machida Environmental Dna 4 (4), 894-907, 2022 | 93 | 2022 |
| Zooplankton diversity analysis through single-gene sequencing of a community sample RJ Machida, Y Hashiguchi, M Nishida, S Nishida Bmc Genomics 10, 1-7, 2009 | 90 | 2009 |
| MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database M Leray, SL Ho, IJ Lin, RJ Machida Bioinformatics 34 (21), 3753-3754, 2018 | 82 | 2018 |
| Comparison of morphological and molecular traits for species identification and taxonomic grouping of oncaeid copepods R Böttger-Schnack, RJ Machida Hydrobiologia 666, 111-125, 2011 | 74 | 2011 |
| PCR-Based Approach for Sequencing Mitochondrial Genomes of Decapod Crustaceans, with a Practical Example from Kuruma Prawn (Marsupenaeus japonicus) MM Yamauchi, MU Miya, RJ Machida, M Nishida Marine Biotechnology 6, 419-429, 2004 | 65 | 2004 |
| A census of zooplankton of the global ocean A Bucklin, S Nishida, S Schnack-Schiel, PH Wiebe, D Lindsay, ... Life in the World’s Oceans: Diversity, Distribution, and Abundance, edited …, 2010 | 63 | 2010 |
| Molecular phylogeny and evolution of the pelagic copepod genus Neocalanus (Crustacea: Copepoda) RJ Machida, MU Miya, M Nishida, S Nishida Marine Biology 148, 1071-1079, 2006 | 57 | 2006 |
| Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences RJ Machida, A Tsuda PLoS one 5 (4), e10278, 2010 | 55 | 2010 |
| Genetic diversity and cryptic speciation of the deep sea chaetognath Caecosagitta macrocephala (Fowler, 1904) H Miyamoto, RJ Machida, S Nishida Deep Sea Research Part II: Topical Studies in Oceanography 57 (24-26), 2211-2219, 2010 | 54 | 2010 |
| PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences RJ Machida, M Kweskin, N Knowlton PLoS One 7 (4), e35887, 2012 | 42 | 2012 |
| Organization of the Mitochondrial Genome of Antarctic Krill Euphausia superba (Crustacea: Malacostraca) RJ Machida, MU Miya, MM Yamauchi, M Nishida, S Nishida Marine Biotechnology 6, 238-250, 2004 | 42 | 2004 |
| Global phylogeography of the deep-sea pelagic chaetognath Eukrohnia hamata H Miyamoto, RJ Machida, S Nishida Progress in oceanography 104, 99-109, 2012 | 29 | 2012 |
