| An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014 | 2799 | 2014 |
| A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1812 | 2014 |
| CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing K Labun, TG Montague, M Krause, YN Torres Cleuren, H Tjeldnes, ... Nucleic acids research 47 (W1), W171-W174, 2019 | 1658 | 2019 |
| CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing TG Montague, JM Cruz, JA Gagnon, GM Church, E Valen Nucleic acids research 42 (W1), W401-W407, 2014 | 1360 | 2014 |
| CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering K Labun, TG Montague, JA Gagnon, SB Thyme, E Valen Nucleic acids research 44 (W1), W272-W276, 2016 | 1053 | 2016 |
| Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs JA Gagnon, E Valen, SB Thyme, P Huang, L Ahkmetova, A Pauli, ... PloS one 9 (5), e98186, 2014 | 1047 | 2014 |
| Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis A Pauli, E Valen, MF Lin, M Garber, NL Vastenhouw, JZ Levin, L Fan, ... Genome research 22 (3), 577-591, 2012 | 850 | 2012 |
| JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update JC Bryne, E Valen, MHE Tang, T Marstrand, O Winther, I da Piedade, ... Nucleic acids research 36 (suppl_1), D102-D106, 2007 | 845 | 2007 |
| JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles E Portales-Casamar, S Thongjuea, AT Kwon, D Arenillas, X Zhao, ... Nucleic acids research 38 (suppl_1), D105-D110, 2010 | 745 | 2010 |
| Toddler: an embryonic signal that promotes cell movement via Apelin receptors A Pauli, ML Norris, E Valen, GL Chew, JA Gagnon, S Zimmerman, ... Science 343 (6172), 1248636, 2014 | 682 | 2014 |
| The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009 | 430 | 2009 |
| Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality E Ntini, AI Järvelin, J Bornholdt, Y Chen, M Boyd, M Jørgensen, ... Nature structural & molecular biology 20 (8), 923-928, 2013 | 315 | 2013 |
| A code for transcription initiation in mammalian genomes MC Frith, E Valen, A Krogh, Y Hayashizaki, P Carninci, A Sandelin Genome research 18 (1), 1-12, 2008 | 310 | 2008 |
| Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs GL Chew, A Pauli, JL Rinn, A Regev, AF Schier, E Valen Development 140 (13), 2828-2834, 2013 | 309 | 2013 |
| PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters P Preker, K Almvig, MS Christensen, E Valen, CK Mapendano, ... Nucleic acids research 39 (16), 7179-7193, 2011 | 204 | 2011 |
| Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus FT Merkle, WM Neuhausser, D Santos, E Valen, JA Gagnon, K Maas, ... Cell reports 11 (6), 875-883, 2015 | 198 | 2015 |
| Nuclear stability and transcriptional directionality separate functionally distinct RNA species R Andersson, P Refsing Andersen, E Valen, LJ Core, J Bornholdt, M Boyd, ... Nature communications 5 (1), 5336, 2014 | 198 | 2014 |
| Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome JS Pedersen, E Valen, AMV Velazquez, BJ Parker, M Rasmussen, ... Genome research 24 (3), 454-466, 2014 | 192 | 2014 |
| Internal guide RNA interactions interfere with Cas9-mediated cleavage SB Thyme, L Akhmetova, TG Montague, E Valen, AF Schier Nature communications 7 (1), 11750, 2016 | 178 | 2016 |
| Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE E Valen, G Pascarella, A Chalk, N Maeda, M Kojima, C Kawazu, M Murata, ... Genome research 19 (2), 255-265, 2009 | 164 | 2009 |
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen University, DenmarkPatvirtintas el. paštas binf.ku.dk
