| Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain MN Tran, KR Maynard, A Spangler, LA Huuki, KD Montgomery, ... Neuron 109 (19), 3088-3103. e5, 2021 | 185 | 2021 |
| Single-cell multi-cohort dissection of the schizophrenia transcriptome WB Ruzicka, S Mohammadi, JF Fullard, J Davila-Velderrain, S Subburaju, ... Science 384 (6698), eadg5136, 2024 | 50 | 2024 |
| Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways PP Zandi, AE Jaffe, FS Goes, EE Burke, L Collado-Torres, L Huuki-Myers, ... Nature neuroscience 25 (3), 381-389, 2022 | 46 | 2022 |
| Analysis of the caudate nucleus transcriptome in individuals with schizophrenia highlights effects of antipsychotics and new risk genes KJM Benjamin, Q Chen, AE Jaffe, JM Stolz, L Collado-Torres, ... Nature neuroscience 25 (11), 1559-1568, 2022 | 45 | 2022 |
| Genetics and brain transcriptomics of completed suicide G Punzi, G Ursini, Q Chen, E Radulescu, R Tao, LA Huuki, P Di Carlo, ... American journal of psychiatry 179 (3), 226-241, 2022 | 35 | 2022 |
| Predicting clone genotypes from tumor bulk sequencing of multiple samples S Miura, K Gomez, O Murillo, LA Huuki, T Vu, T Buturla, S Kumar Bioinformatics 34 (23), 4017-4026, 2018 | 33 | 2018 |
| Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex L Huuki-Myers, A Spangler, N Eagles, KD Montgomery, SH Kwon, B Guo, ... BioRxiv, 2023 | 29 | 2023 |
| Computational enhancement of single-cell sequences for inferring tumor evolution S Miura, LA Huuki, T Buturla, T Vu, K Gomez, S Kumar Bioinformatics 34 (17), i917-i926, 2018 | 29 | 2018 |
| Somatic evolutionary timings of driver mutations K Gomez, S Miura, LA Huuki, BS Spell, JP Townsend, S Kumar BMC cancer 18, 1-10, 2018 | 28 | 2018 |
| A new method for inferring timetrees from temporally sampled molecular sequences S Miura, K Tamura, Q Tao, LA Huuki, SL Kosakovsky Pond, J Priest, ... PLoS Computational Biology 16 (1), e1007046, 2020 | 27 | 2020 |
| Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets SK Maden, SH Kwon, LA Huuki-Myers, L Collado-Torres, SC Hicks, ... Genome biology 24 (1), 288, 2023 | 26 | 2023 |
| A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex LA Huuki-Myers, A Spangler, NJ Eagles, KD Montgomery, SH Kwon, ... Science 384 (6698), eadh1938, 2024 | 20 | 2024 |
| Relative efficiencies of simple and complex substitution models in estimating divergence times in phylogenomics Q Tao, J Barba-Montoya, LA Huuki, MK Durnan, S Kumar Molecular Biology and Evolution 37 (6), 1819-1831, 2020 | 19 | 2020 |
| Systems biology dissection of PTSD and MDD across brain regions, cell types, and blood NP Daskalakis, A Iatrou, C Chatzinakos, A Jajoo, C Snijders, D Wylie, ... Science 384 (6698), eadh3707, 2024 | 18 | 2024 |
| SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses NJ Eagles, EE Burke, J Leonard, BK Barry, JM Stolz, L Huuki, BDN Phan, ... BMC bioinformatics 22 (1), 224, 2021 | 17 | 2021 |
| Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry KJM Benjamin, Q Chen, NJ Eagles, LA Huuki-Myers, L Collado-Torres, ... Nature neuroscience 27 (6), 1064-1074, 2024 | 10 | 2024 |
| Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex LA Huuki-Myers, KD Montgomery, SH Kwon, S Cinquemani, NJ Eagles, ... BioRxiv, 2024 | 6 | 2024 |
| escheR: unified multi-dimensional visualizations with Gestalt principles B Guo, LA Huuki-Myers, M Grant-Peters, L Collado-Torres, SC Hicks Bioinformatics Advances 3 (1), vbad179, 2023 | 6 | 2023 |
| Transcriptomic analysis of the human habenula in schizophrenia EA Yalcinbas, B Ajanaku, ED Nelson, R Garcia-Flores, NJ Eagles, ... BioRxiv, 2024 | 4 | 2024 |
| Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue LA Huuki-Myers, KD Montgomery, SH Kwon, SC Page, SC Hicks, ... Genome biology 24 (1), 233, 2023 | 4 | 2023 |
