| Towards the biogeography of prokaryotic genes LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ... Nature 601 (7892), 252-256, 2022 | 145 | 2022 |
| A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments S Pan, C Zhu, XM Zhao, LP Coelho Nature communications 13 (1), 2326, 2022 | 111 | 2022 |
| Macrel: antimicrobial peptide screening in genomes and metagenomes CD Santos-Junior, S Pan, XM Zhao, LP Coelho PeerJ 8, e10555, 2020 | 66 | 2020 |
| STAB: a spatio-temporal cell atlas of the human brain L Song, S Pan, Z Zhang, L Jia, WH Chen, XM Zhao Nucleic acids research 49 (D1), D1029-D1037, 2021 | 65 | 2021 |
| SemiBin2: self-supervised contrastive learning leads to better MAGs for short-and long-read sequencing S Pan, XM Zhao, LP Coelho Bioinformatics 39 (Supplement_1), i21–i29, 2023 | 51 | 2023 |
| mMGE: a database for human metagenomic extrachromosomal mobile genetic elements S Lai, L Jia, B Subramanian, S Pan, J Zhang, Y Dong, WH Chen, ... Nucleic acids research 49 (D1), D783-D791, 2021 | 28 | 2021 |
| metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies S Lai, S Pan, C Sun, LP Coelho, WH Chen, XM Zhao Genome Biology 23 (1), 242, 2022 | 25 | 2022 |