| FASconCAT: convenient handling of data matrices P Kück, K Meusemann Molecular phylogenetics and evolution 56 (3), 1115-1118, 2010 | 526 | 2010 |
| FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies P Kück, GC Longo Frontiers in zoology 11 (1), 1-8, 2014 | 509 | 2014 |
| A phylogenomic approach to resolve the arthropod tree of life K Meusemann, BM von Reumont, S Simon, F Roeding, S Strauss, P Kück, ... Molecular biology and Evolution 27 (11), 2451-2464, 2010 | 391 | 2010 |
| Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees P Kück, K Meusemann, J Dambach, B Thormann, BM von Reumont, ... Frontiers in zoology 7 (1), 1-12, 2010 | 245 | 2010 |
| Platyzoan paraphyly based on phylogenomic data supports a noncoelomate ancestry of Spiralia TH Struck, AR Wey-Fabrizius, A Golombek, L Hering, A Weigert, ... Molecular biology and evolution 31 (7), 1833-1849, 2014 | 189 | 2014 |
| AliGROOVE–visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support P Kück, SA Meid, C Groß, JW Wägele, B Misof BMC bioinformatics 15 (1), 1-15, 2014 | 152 | 2014 |
| BaCoCa–A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions P Kück, TH Struck Molecular phylogenetics and evolution 70, 94-98, 2014 | 140 | 2014 |
| Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model P Kück, C Mayer, JW Wägele, B Misof PLoS One 7 (5), e36593, 2012 | 100 | 2012 |
| Selecting informative subsets of sparse supermatrices increases the chance to find correct trees B Misof, B Meyer, BM von Reumont, P Kück, K Misof, K Meusemann Bmc Bioinformatics 14 (1), 1-13, 2013 | 94 | 2013 |
| Phylogenetic evidence for multiple independent origins of functional kleptoplasty in Sacoglossa (Heterobranchia, Gastropoda) G Christa, K Händeler, P Kück, M Vleugels, J Franken, D Karmeinski, ... Organisms Diversity & Evolution 15 (1), 23-36, 2015 | 68 | 2015 |
| The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods HO Letsch, P Kück, RR Stocsits, B Misof Molecular biology and evolution 27 (11), 2507-2521, 2010 | 66 | 2010 |
| Improved Phylogenetic Analyses Corroborate a Plausible Position of Martialis heureka in the Ant Tree of Life P Kück, F Hita Garcia, B Misof, K Meusemann PloS one 6 (6), e21031, 2011 | 43 | 2011 |
| 12 Arthropod phylogeny and the origin of Tracheata (= Atelocerata) from Remipedia–like ancestors JW Wägele, P Kück Deep metazoan phylogeny: the backbone of the tree of life, 285-342, 2014 | 29 | 2014 |
| FASconCAT, Version 1.0 P Kück, K Meusemann Zool. Forschungsmuseum A. Koenig, Germany, 2010 | 25* | 2010 |
| Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation HO Letsch, C Greve, P Kück, G Fleck, RR Stocsits, B Misof Molecular Phylogenetics and Evolution 53 (3), 758-771, 2009 | 22 | 2009 |
| Plesiomorphic character states cause systematic errors in molecular phylogenetic analyses: a simulation study P Kück, JW Wägele Cladistics 32 (4), 461-478, 2016 | 20 | 2016 |
| A priori assessment of data quality in molecular phylogenetics B Misof, K Meusemann, BM von Reumont, P Kück, SJ Prohaska, ... Algorithms for Molecular Biology 9 (1), 1-8, 2014 | 20 | 2014 |
| Automated masking of AFLP markers improves reliability of phylogenetic analyses P Kück, C Greve, B Misof, F Gimnich PLoS One 7 (11), e49119, 2012 | 17 | 2012 |
| Tetramorium boehmei sp. n.–a new ant (Hymenoptera: Formicidae) species from the Kakamega Forest, Western Kenya FH Garcia, G Fischer, P Kück, B Thormann, MK Peters Bonn zoological Bulletin 57 (2), 2010 | 10 | 2010 |
| Can quartet analyses combining maximum likelihood estimation and Hennigian logic overcome long branch attraction in phylogenomic sequence data? P Kück, M Wilkinson, C Groß, PG Foster, JW Wägele PloS one 12 (8), e0183393, 2017 | 6 | 2017 |
