| The HDOCK server for integrated protein–protein docking Y Yan, H Tao, J He, SY Huang Nature Protocols 15 (5), 1829-1852, 2020 | 1195 | 2020 |
| HDOCK: a web server for protein-protein and protein-DNA/RNA docking based on a hybrid strategy. Y Yan, D Zhang, P Zhou, B Li, SY Huang Nucleic Acids Research 45 (W1), W365–W373, 2017 | 1059 | 2017 |
| Advances and challenges in protein-ligand docking SY Huang, X Zou International journal of molecular sciences 11 (8), 3016-3034, 2010 | 765 | 2010 |
| Scoring functions and their evaluation methods for protein–ligand docking: recent advances and future directions SY Huang, SZ Grinter, X Zou Physical Chemistry Chemical Physics 12 (40), 12899-12908, 2010 | 675 | 2010 |
| HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm P Zhou, B Jin, H Li, SY Huang Nucleic acids research 46 (W1), W443-W450, 2018 | 487 | 2018 |
| Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking SY Huang, X Zou Proteins: Structure, Function, and Bioinformatics 66 (2), 399-421, 2007 | 449 | 2007 |
| An iterative knowledge‐based scoring function for protein–protein recognition SY Huang, X Zou Proteins: Structure, Function, and Bioinformatics 72 (2), 557-579, 2008 | 340 | 2008 |
| An iterative knowledge‐based scoring function to predict protein–ligand interactions: I. Derivation of interaction potentials SY Huang, X Zou Journal of computational chemistry 27 (15), 1866-1875, 2006 | 239 | 2006 |
| Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2 J He, H Tao, Y Yan, SY Huang, Y Xiao Viruses 12 (4), 428, 2020 | 223 | 2020 |
| Search strategies and evaluation in protein–protein docking: principles, advances and challenges SY Huang Drug Discovery Today 19 (8), 1081-1096, 2014 | 186 | 2014 |
| An iterative knowledge‐based scoring function to predict protein–ligand interactions: II. Validation of the scoring function SY Huang, X Zou Journal of computational chemistry 27 (15), 1876-1882, 2006 | 180 | 2006 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method SY Huang, X Zou Nucleic acids research 42 (7), e55-e55, 2014 | 165 | 2014 |
| Inclusion of solvation and entropy in the knowledge-based scoring function for protein− ligand interactions SY Huang, X Zou Journal of chemical information and modeling 50 (2), 262-273, 2010 | 160 | 2010 |
| IL-6 regulates autophagy and chemotherapy resistance by promoting BECN1 phosphorylation F Hu, D Song, Y Yan, C Huang, C Shen, J Lan, Y Chen, A Liu, Q Wu, ... Nature communications 12 (1), 3651, 2021 | 159 | 2021 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 158 | 2011 |
| Rational truncation of an RNA aptamer to prostate-specific membrane antigen using computational structural modeling WM Rockey, FJ Hernandez, SY Huang, S Cao, CA Howell, GS Thomas, ... Nucleic acid therapeutics 21 (5), 299-314, 2011 | 158 | 2011 |
| Efficient molecular docking of NMR structures: Application to HIV‐1 protease SY Huang, X Zou Protein science 16 (1), 43-51, 2007 | 135 | 2007 |
| Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking Y Yan, Z Wen, X Wang, SY Huang Proteins: Structure, Function, and Bioinformatics 85 (3), 497-512, 2017 | 132 | 2017 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 128 | 2019 |
