Nicholas Bokulich

Cituota

	Visi	Nuo 2020
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Bendraautoriai

J Gregory CaporasoNorthern Arizona UniversityPatvirtintas el. paštas nau.edu
David A. MillsDistinguished Professor; Peter J. Shields Endowed Chair; University of California-DavisPatvirtintas el. paštas ucdavis.edu
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDPatvirtintas el. paštas ucsd.edu
Evan BolyenSenior Research Software Engineer, Northern Arizona UniversityPatvirtintas el. paštas nau.edu
Matthew Ryan DillonStaff Software EngineerPatvirtintas el. paštas akdillon.net
B KaehlerSchool of Science, University of New South WalesPatvirtintas el. paštas adfa.edu.au
Jai Ram RideoutOne CodexPatvirtintas el. paštas onecodex.com
Gavin HuttleyProfessor of Computational Genomics, Australian National UniversityPatvirtintas el. paštas anu.edu.au
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityPatvirtintas el. paštas cabm.rutgers.edu
Huilin LiProfessor, NYU Langone HealthPatvirtintas el. paštas nyulangone.org
Se Jin SongUniversity of California San DiegoPatvirtintas el. paštas ucsd.edu
Thomas W. BattagliaThe Netherlands Cancer Institute (NKI)Patvirtintas el. paštas nyu.edu
Maria Gloria Dominguez-BelloProfessorPatvirtintas el. paštas rutgers.edu
Christian AbnetNational Cancer InstitutePatvirtintas el. paštas mail.nih.gov
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDPatvirtintas el. paštas ucsd.edu
Yoshiki Vázquez-BaezaBiomeSensePatvirtintas el. paštas biomesense.com
Karen KalanetraUniversity of CaliforniaPatvirtintas el. paštas ucdavis.edu
Michał ZiemskiResearch Software Engineer, ETH ZürichPatvirtintas el. paštas hest.ethz.ch
Michael S. Robeson II, Ph.D.Associate Professor, Department of Biomedical Informatics, UAMSPatvirtintas el. paštas uams.edu
Sathish SubramanianPatvirtintas el. paštas wusm.wustl.edu

Stebėti

Nicholas Bokulich

ETH Zürich

Patvirtintas el. paštas ethz.ch - Pagrindinis puslapis

Food Microbiome Metagenomics Bioinformatics Biodiversity


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	18622	2019
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6, 1-17, 2018	4675	2018
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ... Nature methods 10 (1), 57-59, 2013	4158	2013
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	2523	2017
Antibiotics, birth mode, and diet shape microbiome maturation during early life NA Bokulich, J Chung, T Battaglia, N Henderson, M Jay, H Li, A D. Lieber, ... Science translational medicine 8 (343), 343ra82-343ra82, 2016	1525	2016
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250-253, 2016	1121	2016
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate NA Bokulich, JH Thorngate, PM Richardson, DA Mills Proceedings of the National Academy of Sciences 111 (1), E139-E148, 2014	1019	2014
The soil microbiome influences grapevine-associated microbiota I Zarraonaindia, SM Owens, P Weisenhorn, K West, J Hampton-Marcell, ... MBio 6 (2), 10.1128/mbio. 02527-14, 2015	875	2015
RESCRIPt: Reproducible sequence taxonomy reference database management MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... PLoS computational biology 17 (11), e1009581, 2021	625	2021
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities NA Bokulich, DA Mills Applied and environmental microbiology 79 (8), 2519-2526, 2013	541	2013
The microbiology of malting and brewing NA Bokulich, CW Bamforth Microbiology and Molecular Biology Reviews 77 (2), 157-172, 2013	469	2013
Associations among wine grape microbiome, metabolome, and fermentation behavior suggest microbial contribution to regional wine characteristics NA Bokulich, TS Collins, C Masarweh, G Allen, H Heymann, SE Ebeler, ... MBio 7 (3), 10.1128/mbio. 00631-16, 2016	434	2016
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment YR Nobel, LM Cox, FF Kirigin, NA Bokulich, S Yamanishi, I Teitler, ... Nature communications 6 (1), 7486, 2015	396	2015
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020	374	2020
Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants NA Bokulich, DA Mills Applied and environmental microbiology 79 (17), 5214-5223, 2013	312	2013
Next-generation sequencing reveals significant bacterial diversity of botrytized wine NA Bokulich, CML Joseph, G Allen, AK Benson, DA Mills PloS one 7 (5), e36357, 2012	283	2012
Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019	270	2019
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ... MSystems 3 (6), 10.1128/msystems. 00219-18, 2018	252	2018
Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study MLA De Leoz, KM Kalanetra, NA Bokulich, JS Strum, MA Underwood, ... Journal of proteome research 14 (1), 491-502, 2015	236	2015
Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale NA Bokulich, CW Bamforth, DA Mills PloS one 7 (4), e35507, 2012	230	2012

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