Sebastian Kmiecik

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Andrzej KolinskiProfessor, University of WarsawPatvirtintas el. paštas chem.uw.edu.pl
Mateusz KurcinskiUniwersytet WarszawskiPatvirtintas el. paštas chem.uw.edu.pl
Michal KolinskiBioinformatics Laboratory, Mossakowski Medical Research Institute Polish Academy of SciencesPatvirtintas el. paštas imdik.pan.pl
Aleksandra E. Badaczewska-DawidResearch Scientist IV, Genome Informatics Facility, Iowa State UniversityPatvirtintas el. paštas iastate.edu
Dominik GrontUniversity of Warsaw, Faculty of ChemistryPatvirtintas el. paštas chem.uw.edu.pl
Michal JamrozUniversity of WarsawPatvirtintas el. paštas chem.uw.edu.pl
Maciej BlaszczykUniversity of WarsawPatvirtintas el. paštas chem.uw.edu.pl
Maciej Paweł CiemnyUniversity of WarsawPatvirtintas el. paštas fuw.edu.pl
Salvador VenturaInstitute of Biotechnology and Biomedicine (IBB), Universitat Autonoma de BarcelonaPatvirtintas el. paštas uab.es
Maksim KouzaFaculty of Chemistry, University of WarsawPatvirtintas el. paštas chem.uw.edu.pl
Lukasz WieteskaResearch Associate, The Francis Crick InstitutePatvirtintas el. paštas pitt.edu
Jordi PujolsUniversitat Autònoma de BarcelonaPatvirtintas el. paštas uab.cat
Valentin IglesiasAssociate Professor - Medical University of BiałystokPatvirtintas el. paštas uab.cat
Karol KamelInstitute of Bioorganic Chemistry, PASPatvirtintas el. paštas ibch.poznan.pl
Ora Schueler-FurmanHebrew University, Jerusalem, IsraelPatvirtintas el. paštas mail.huji.ac.il
Daniel SzulczykAssociate Professor, Medical University of WarsawPatvirtintas el. paštas wum.edu.pl
Mateusz ZalewskiLaboratory of Computational Biology, Biological and Chemical Research Centre, University of WarsawPatvirtintas el. paštas uw.edu.pl
Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Institute for Genomic Medicine, NCHPatvirtintas el. paštas osu.edu
Nawsad AlamUniversity of OxfordPatvirtintas el. paštas bioch.ox.ac.uk
Javier Garcia-PardoProfessor in Biochemistry and Molecular Biology, IBB-Universitat Autonoma de BarcelonaPatvirtintas el. paštas uab.cat

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Sebastian Kmiecik

Laboratory of Computational Biology, Biological and Chemical Research Centre, University of Warsaw

Patvirtintas el. paštas chem.uw.edu.pl - Pagrindinis puslapis

structural biology protein modeling peptide docking drug design bioinformatics


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Coarse-Grained Protein Models and Their Applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical Reviews 116 (14), 7898-7936, 2016	1151	2016
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015	401	2015
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018	377	2018
Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018	305	2018
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura Nucleic acids research 43 (W1), W306-W313, 2015	258	2015
CABS-flex: server for fast simulation of protein structure fluctuations M Jamroz, A Kolinski, S Kmiecik Nucleic acids research, W427-W431, 2013	182	2013
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ... Methods 93, 72-83, 2016	179	2016
Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates D Gront, S Kmiecik, A Kolinski Journal of computational chemistry 28 (9), 1593-1597, 2007	143	2007
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura Nucleic acids research 47 (W1), W300–W307, 2019	141	2019
Folding pathway of the B1 domain of protein G explored by multiscale modeling S Kmiecik, A Kolinski Biophysical journal 94 (3), 726-736, 2008	134	2008
Characterization of protein-folding pathways by reduced-space modeling S Kmiecik, A Kolinski Proceedings of the National Academy of Sciences 104 (30), 12330-12335, 2007	114	2007
CABS-fold: server for the de novo and consensus-based prediction of protein structure M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski Nucleic acids research 41 (W1), W406-W411, 2013	112	2013
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik Bioinformatics 35 (4), 694-695, 2019	107	2019
CABS-flex predictions of protein flexibility compared with NMR ensembles M Jamroz, A Kolinski, S Kmiecik Bioinformatics 30 (15), 2150-2154, 2014	97	2014
Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field M Jamroz, M Orozco, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 9 (1), 119-125, 2013	97	2013
Flexible docking of peptides to proteins using CABS‐dock M Kurcinski, A Badaczewska‐Dawid, M Kolinski, A Kolinski, S Kmiecik Protein Science 29 (1), 211-222, 2020	74	2020
CABS-dock standalone: a toolbox for flexible protein–peptide docking M Kurcinski, M Pawel Ciemny, T Oleniecki, A Kuriata, ... Bioinformatics 35 (20), 4170–4172, 2019	72	2019
Computational reconstruction of atomistic protein structures from coarse-grained models AE Badaczewska-Dawid, A Kolinski, S Kmiecik Computational and Structural Biotechnology Journal 18, 162-176, 2020	65	2020
Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski International journal of molecular sciences 19 (11), 3496, 2018	64	2018
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field S Kmiecik, D Gront, A Kolinski BMC structural biology 7, 1-11, 2007	61	2007

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