| Scaffolding pre-assembled contigs using SSPACE M Boetzer, CV Henkel, HJ Jansen, D Butler, W Pirovano Bioinformatics 27 (4), 578-579, 2011 | 2602 | 2011 |
| Toward almost closed genomes with GapFiller M Boetzer, W Pirovano Genome biology 13, 1-9, 2012 | 1208 | 2012 |
| SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information M Boetzer, W Pirovano BMC bioinformatics 15, 1-9, 2014 | 577 | 2014 |
| The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ... Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013 | 532 | 2013 |
| Protein secondary structure prediction W Pirovano, J Heringa Data Mining Techniques for the Life Sciences, 327-348, 2010 | 164 | 2010 |
| PRALINE™: a strategy for improved multiple alignment of transmembrane proteins W Pirovano, KA Feenstra, J Heringa Bioinformatics 24 (4), 492-497, 2008 | 141 | 2008 |
| First draft genome sequence of the Japanese eel, Anguilla japonica CV Henkel, RP Dirks, DL de Wijze, Y Minegishi, J Aoyama, HJ Jansen, ... Gene 511 (2), 195-201, 2012 | 120 | 2012 |
| Correlated substitution analysis and the prediction of amino acid structural contacts DS Horner, W Pirovano, G Pesole Briefings in bioinformatics 9 (1), 46-56, 2008 | 89 | 2008 |
| Sequence comparison by sequence harmony identifies subtype-specific functional sites W Pirovano, KA Feenstra, J Heringa Nucleic acids research 34 (22), 6540-6548, 2006 | 85 | 2006 |
| Multiple sequence alignment P Bawono, M Dijkstra, W Pirovano, A Feenstra, S Abeln, J Heringa Bioinformatics: volume I: data, sequence analysis, and evolution, 167-189, 2017 | 65 | 2017 |
| Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa A Van der Zee, WB Kraak, A Burggraaf, WHF Goessens, W Pirovano, ... Frontiers in microbiology 9, 2057, 2018 | 57 | 2018 |
| The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing DSJ Groenenberg, W Pirovano, E Gittenberger, M Schilthuizen BMC genomics 13, 1-11, 2012 | 52 | 2012 |
| Sequence harmony: detecting functional specificity from alignments KA Feenstra, W Pirovano, K Krab, J Heringa Nucleic acids research 35 (suppl_2), W495-W498, 2007 | 47 | 2007 |
| Multiple sequence alignment W Pirovano, J Heringa Bioinformatics: Data, Sequence Analysis and Evolution, 143-161, 2008 | 42 | 2008 |
| Comparative genomics elucidates the origin of a supergene controlling floral heteromorphism G Potente, É Léveillé-Bourret, N Yousefi, RR Choudhury, B Keller, SI Diop, ... Molecular Biology and Evolution 39 (2), msac035, 2022 | 36 | 2022 |
| A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha SI Diop, O Subotic, A Giraldo‐Fonseca, M Waller, A Kirbis, A Neubauer, ... The Plant Journal 101 (6), 1378-1396, 2020 | 34 | 2020 |
| Homeologs of the Nicotiana benthamiana Antiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control T Gursinsky, W Pirovano, G Gambino, S Friedrich, SE Behrens, ... Plant Physiology 168 (3), 938-952, 2015 | 34 | 2015 |
| Genome sequence of EU-unauthorized genetically modified Bacillus subtilis strain 2014-3557 overproducing riboflavin, isolated from a vitamin B2 80% feed additive E Barbau-Piednoir, SCJ De Keersmaecker, V Wuyts, C Gau, W Pirovano, ... Genome Announcements 3 (2), 10.1128/genomea. 00214-15, 2015 | 34 | 2015 |
| Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population W Pirovano, L Miozzi, M Boetzer, V Pantaleo Frontiers in Microbiology 5, 790, 2015 | 34 | 2015 |
| The butyrate-producing and spore-forming bacterial genus Coprococcus as a potential biomarker for neurological disorders F Notting, W Pirovano, W Sybesma, R Kort Gut Microbiome 4, e16, 2023 | 31 | 2023 |
